Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00216 ATGCATCGTAACCTGAGAATATTAGTGCCTACTCAAAGAAATCCACTCACCCTTGTTATCGTCTTCGTGTTCTTACCTGCATTATGCAGCTCAGAAAACACATTTACGCCATCTAGAGCAACCTACTATGGCAGTCCTGATTGTTATGGTACACCAACTGGTGCTTGTGGTTATGGTGAAGACGGAAGGACAGGAAACGACGGCAATGTCGCTGCGGTCTCTAATACTCTTTTCAGAAATGGAACTGGCTGTGGTGCCTGTTATCAGGTAAGGTGCACGAACCCACAATACTGTGACGAGACAGGAACCTACGTAGTGGTGACAGACCATGGAGAAGGAGACAGAACAGACTTCATTCTAACCCCTCGTGCCTTCGCAAAGTTGGGACGTGATGAAGACACATCCACAGAGCTTTTCAAGTGTGGTGTGGTTGAAATACAACACCGAAGGGTTCCCTGCGGATTGTCCTCTTATACTCTTGCAATGAAGGTTCATCCGCACAGCAAATACCCAGAGTACTTGGCCATTGCTATTCTCTTCGTTTATGGAGAGAACGATGTCACTGCAGTGGAACTCTGGCAGGAGGATTGCAAAGAATGGAGAGGCTTTCGAAGAGCCTATGGAGCTGTGTGGGACATTCCTAACCCTCCTCGCAATGGGATTACTTTGAGGTACCAAGTGAGTGGCAGTGCAGGGACGACTTGGGTTCAATCTGAAAATGTGTTTAATGGGGAATGGAAGGTCGGAACAACTTACTATGTTCAAGCATGA 771 0.4708 MHRNLRILVPTQRNPLTLVIVFVFLPALCSSENTFTPSRATYYGSPDCYGTPTGACGYGEDGRTGNDGNVAAVSNTLFRNGTGCGACYQVRCTNPQYCDETGTYVVVTDHGEGDRTDFILTPRAFAKLGRDEDTSTELFKCGVVEIQHRRVPCGLSSYTLAMKVHPHSKYPEYLAIAILFVYGENDVTAVELWQEDCKEWRGFRRAYGAVWDIPNPPRNGITLRYQVSGSAGTTWVQSENVFNGEWKVGTTYYVQA* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00216 256 PANTHER EXPANSIN-B3 25 253 - -
Pte12g00216 256 Pfam Lytic transglycolase 71 146 IPR009009 -
Pte12g00216 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 158 IPR007112 -
Pte12g00216 256 SMART dpbb_1 70 148 IPR007112 -
Pte12g00216 256 SUPERFAMILY Barwin-like endoglucanases 22 155 IPR036908 -
Pte12g00216 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 254 IPR007117 -
Pte12g00216 256 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Pte12g00216 256 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Pte12g00216 256 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Pte12g00216 256 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Pte12g00216 256 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Pte12g00216 256 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Pte12g00216 256 Gene3D - 26 153 IPR036908 -
Pte12g00216 256 SUPERFAMILY PHL pollen allergen 161 252 IPR036749 -
Pte12g00216 256 CDD DPBB_EXLB_N 38 153 - -
Pte12g00216 256 Gene3D - 156 256 IPR036749 -
Pte12g00216 256 Pfam Expansin C-terminal domain 161 241 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00216 Pte-Chr12 1736651 1738095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00216 16 252 Expansin Gene Family AT4G17030 55.274 1.14e-92 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00216 - - qsa:O6P43_024411 348.591