Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00215 ATGGGAGCTATGGTAAATTCAGAGTCATTGGAAAACAATGACTCACCTGGTGTTTCTTCCATTCAAGCTGTTATGCCCAAATATAAGCGGCGTAGAGTTTCTGCTATTCGTGATTATCCTCCTGGGTGTGGAAGGTGTGCTGCACCAATAACAAAGATCACAGATGCGGTGGAAGATGCAGGCAATGATTTTGCCGATGAAACGCATGAAGGGTTGGCTGCTTCACTTGTTGGTGCTTTTGGAAACGAAAATAAGCCTCAAACTGCTTATATCGTTACAAATTCATCTCCTACTGGAATGAATGAGCTCAAGGATGGTCTGGAAGCGAAGGAAGCAATTCTAGGAAATGGGCATGGTTCTATGAACAATGAGCCTTCAGAGGCTGCTCAGCTTGTAAAATGTGAATCTTCTGATATTTCGAAACAAGTCAATGTTGATTGCATGGTTTCTCAACAACTGCTTACTGCTGGCTTAGAGAAGGCTAGGACCATAAGATATCCTCCTAGAGGAAGGGTCTCAGCCATCCGTGACTATCCTCCATACTGTGGGAGATTTGCTCCATGTCCTAACAACAGTAAACATGTTGAGGTGGAGTCTTCTGAGAAGAACACAAATCTTGGTGAACAGATCACATCTTCAGATGACAAGGCAATTGGAATGGTGGTTGGCGATGAAGGAAAAATGAAGGAAGAAAATGTAAAACAAGGAGAAGGTCGCACTAATGAATTCGTGAATGGTAAAGAGAAGCATGGAGAAGATAAAAACATGTCCGAGGCTGTGTTTGAAGAAGAAATTTGTGTTGGTGAGGTGTGCAAAAGATTGGAGAAGAAGCCCAGGCGATGCTCAGATGAAATGAACCATAGAGAAAAGCTTTCTAACGTATCAGCCTGTCAACATCACTCGCAAAGTGATTTTGGGGGTTCAGGCATTTTGTCAGGCAGAAGGCCTGTGCAGGATTTGATGTCTGAATCAGAAATCTCTTCAAAGCAACGAGAAGATTCTAGAAACTTGGTTGATGGAGGTAAAGAAGAAAATAAATGGCCGTTGGTAGTTACAGAAGAAAATGATTTTGACGATTTGGAAGTTGCATCAGACAGAATGGTTGTTCTGGGTCTGATGACCCAACCATTATGTCCTTGGGGACAGGGAAAACCTAGTCAGCATTTGGCTGGTGGCTCAAGTAATAAGAAAGGCAAGGAAGCTGGTTTTTTTGCACGTTTAGAAAAACCTAAACGTGCCGCCAAGACTAAAAATGCAAAGCATCATTCAGAGTTGAAGCCTTTCAAGAAATTGCCTGCTGCTAGTCTTGGTGTGGACAAAATGATAAGCTGGGTGGATGATAATGATGATGATCTGCTTGAGCAAGAACACGCTGATAACCTACAATTGGCTCACTTACCTGGTAATGTTGAAGTGAATGGTTTTCCTCCTCGTGGTGGCGGTACAAGGATTGATTCTGGAAATAACAATTCAAATGGAAGTAGACACAAAGTGAAGGAGGCATTGCGCCTTTTCCAAGCTGTTTGTAGAAAGCTTTTGCATATAGATGAAGCAAAATCGAAGGAGGAGACAGCTAGATATAGGAGGGTTGATTTGCAAGCTGCTAAACTGGTCAAGTCTGCCAACAAATATGTTAACAGAGACAAGAAGATTATGGGATCTGTACCAGGGGTTGAAATTGGTGATGAGTTTCAGTACAGAGTGGAGCTTAACATGATAGGTCTTCACCACCAGTTACAGGGTGGCATAGATTATGTGAACCATAAAGGCAAGATACTCGCAACTAGTATTGTGGCATCAGGGGGCTATGCTGATGGTTTAGACAATTCAGATGTCTTAATTTATACAGGACAAGGTGGCAATGTGATGAATACAGACAAAAAGCCAGAGGATCAGAAACTTGAGCGGGGTAACCTTGCTCTGAAAAATAGTTGCGACGAAAAAAATCCAGTTAGGGTGATTCGTGGTTCTGAGTCAACGGACGGAAAAACTAAGGTGTTAGTCTATGATGGGTTATACATCGTAGAGAGATACTGGCAGGATGTGGGTCCACATGGCAAGATGGTTTTCAGATTTCGGTTGTGCAGAATCCCTGGTCAACCTGAGCTTGCTTGGAAGGAATTGAAGAAATCCAAAAAACTCAAAAATCGAGAGGGTCTTATTACGGAAGACATTTCCCGAGGAAAGGAGAAAATTCCTATTTGTGCTCTGAATACTATCGATGATGAGAAACCCCCACCATTTAACTACATTACGAGGACTATATATCCTAATTGGTGCAACCCCATTCCTCCTAAGGGGTGTAACTGCACTGATGGGTGCTTGGATTCTGAGAGTTGTTCTTGTGCTGTCAAAAATGGGGGAGAGATACCATACAACCATAACGGGTCTATTGTCGAAGCTAAAGCCCTGGTCTACGAGTGTGGTCCTTCTTGTAAGTGCCCTCCAAGTTGCCATAATAGAGTCACTCAACATGGGATAAAGTTTCAACTTGAAATTTTCAAAACTGAAAAAATGGGATGGGGAGTAAGATCCTCGAATTCTATTCCTTCTGGAAGTTTTATTTGTGAATATATTGGTGAGCTTCTCGATGATACTGAAGCTGAGAAAAGAGCTGGTAGTGATGAATATCTGTTTGATATTGGGAAGAACTATACTGAAAATTCAGTTTGGGATGAGCTTTCCAGCCTTATGCCTGATGATGCACATTGTAGTTCTAGCAAAGGTGTTGAGTGTAATGGTTTTACTATAGATGCTGCTCATTATGGTAATGTTGGGAGGTTTGTAAATCATAGTTGTTCCCCAAACCTTTATGCTCAGGATGTTTTATATGATCATGAAGATTCGAGGATTCCTCACGTAATGCTTTTTGCTATGGACAACATTCCTCCCTTGCAAGAGCTGACATACCATTACAACTATGTAATCGATGAAGTCCGTGATTCTCGTGGCAACATAAAAAGGAAGGATTGCTACTGCGGCTCTGTGGAGTGCACAGGCAGGATGTACTGA 3012 0.4216 MGAMVNSESLENNDSPGVSSIQAVMPKYKRRRVSAIRDYPPGCGRCAAPITKITDAVEDAGNDFADETHEGLAASLVGAFGNENKPQTAYIVTNSSPTGMNELKDGLEAKEAILGNGHGSMNNEPSEAAQLVKCESSDISKQVNVDCMVSQQLLTAGLEKARTIRYPPRGRVSAIRDYPPYCGRFAPCPNNSKHVEVESSEKNTNLGEQITSSDDKAIGMVVGDEGKMKEENVKQGEGRTNEFVNGKEKHGEDKNMSEAVFEEEICVGEVCKRLEKKPRRCSDEMNHREKLSNVSACQHHSQSDFGGSGILSGRRPVQDLMSESEISSKQREDSRNLVDGGKEENKWPLVVTEENDFDDLEVASDRMVVLGLMTQPLCPWGQGKPSQHLAGGSSNKKGKEAGFFARLEKPKRAAKTKNAKHHSELKPFKKLPAASLGVDKMISWVDDNDDDLLEQEHADNLQLAHLPGNVEVNGFPPRGGGTRIDSGNNNSNGSRHKVKEALRLFQAVCRKLLHIDEAKSKEETARYRRVDLQAAKLVKSANKYVNRDKKIMGSVPGVEIGDEFQYRVELNMIGLHHQLQGGIDYVNHKGKILATSIVASGGYADGLDNSDVLIYTGQGGNVMNTDKKPEDQKLERGNLALKNSCDEKNPVRVIRGSESTDGKTKVLVYDGLYIVERYWQDVGPHGKMVFRFRLCRIPGQPELAWKELKKSKKLKNREGLITEDISRGKEKIPICALNTIDDEKPPPFNYITRTIYPNWCNPIPPKGCNCTDGCLDSESCSCAVKNGGEIPYNHNGSIVEAKALVYECGPSCKCPPSCHNRVTQHGIKFQLEIFKTEKMGWGVRSSNSIPSGSFICEYIGELLDDTEAEKRAGSDEYLFDIGKNYTENSVWDELSSLMPDDAHCSSSKGVECNGFTIDAAHYGNVGRFVNHSCSPNLYAQDVLYDHEDSRIPHVMLFAMDNIPPLQELTYHYNYVIDEVRDSRGNIKRKDCYCGSVECTGRMY* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00215 1003 ProSiteProfiles Post-SET domain profile. 987 1003 IPR003616 -
Pte12g00215 1003 SMART preset_2 722 813 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pte12g00215 1003 MobiDBLite consensus disorder prediction 1 20 - -
Pte12g00215 1003 Pfam SAD/SRA domain 552 700 IPR003105 -
Pte12g00215 1003 ProSiteProfiles Pre-SET domain profile. 766 826 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pte12g00215 1003 SMART G9a_1 548 700 IPR003105 -
Pte12g00215 1003 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 279 996 - -
Pte12g00215 1003 SMART set_7 829 979 IPR001214 GO:0005515
Pte12g00215 1003 Gene3D - 535 716 IPR036987 -
Pte12g00215 1003 CDD SET_AtSUVH-like 746 974 - -
Pte12g00215 1003 SMART PostSET_3 987 1003 IPR003616 -
Pte12g00215 1003 Pfam SET domain 840 973 IPR001214 GO:0005515
Pte12g00215 1003 Gene3D SET domain 717 1003 IPR046341 -
Pte12g00215 1003 Pfam Pre-SET motif 725 821 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pte12g00215 1003 MobiDBLite consensus disorder prediction 325 341 - -
Pte12g00215 1003 ProSiteProfiles YDG domain profile. 553 696 IPR003105 -
Pte12g00215 1003 MobiDBLite consensus disorder prediction 1 23 - -
Pte12g00215 1003 ProSiteProfiles SET domain profile. 829 973 IPR001214 GO:0005515
Pte12g00215 1003 SUPERFAMILY PUA domain-like 537 710 IPR015947 -
Pte12g00215 1003 MobiDBLite consensus disorder prediction 292 341 - -
Pte12g00215 1003 SUPERFAMILY SET domain 712 979 IPR046341 -
Pte12g00215 1003 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 411 1003 IPR025794 GO:0016571
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00215 Pte-Chr12 1731148 1735475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00215 549 1004 EF-hand Containing Proteins AT5G13960 42.443 2.39e-115 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pte12g00215 SAD_SRA 6.3e-50 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00215 K11420 - qsa:O6P43_024410 924.85