Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00205 ATGTCAGAGCAGAGTGATTTGGAGTCAGACATGGCGCTTCTTGAATCAATAAGTCGCTACTTGCTTGGAGAATCTGATGGTAGATTTGGGGGCCCGAATAGTATGAGCTCTACCTGTAATGGTCCATTGTATTGTCGGAGCTCCAGCTTCAGCAGCTTGTACCCTTGCTTAACAGAGAGTTGGGGAGAGTTGCCACTCAAAGAAGATGACTCGGAAGACATGTTTCTATATGGGGTGCTTCGTGATGCAGTTCACGTTGGGTGGGTTCCTTCAATTGCTTCCGGTTCAGCAGAATTGAGATTACCCCCAACTGCAACTGTGAAATCCGAGCCGGATTTTTCGCCGACGGTGAGCAGTCATGTAGAGAGTGTGGTGGCTCCTTTGGTAGCTCAGCCGAAAAAGGCTGTTCCTGCAGTTGTTTTGCCAAAGGGGAAGCATTACAGAGGGGTGAGGCATCGGCCGTGGGGGAAATTCGCTGCAGAGATCCGTGACCCGGCTAAGAACGGTGCGAGGGTTTGGCTTGGAACATTCGAAACAGCGGAAGACGCTGCGCTGGCTTATGACAATGCGGCCTACAGAATGCGCGGGTCTCGGGCTCTTCTTAATTTTCCACTCCGCGTGAATTCGGGCGAACCCGGTCCAATAAGACTGGCGTCAAAGCGGTCATCTCCAGAGCTATCGTTGTGTTCACCCAAAAGAAAGCATAAAATGGATACCGGGTCAATGAGTGAAGTGGGTAACTGCTAA 747 0.5087 MSEQSDLESDMALLESISRYLLGESDGRFGGPNSMSSTCNGPLYCRSSSFSSLYPCLTESWGELPLKEDDSEDMFLYGVLRDAVHVGWVPSIASGSAELRLPPTATVKSEPDFSPTVSSHVESVVAPLVAQPKKAVPAVVLPKGKHYRGVRHRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDNAAYRMRGSRALLNFPLRVNSGEPGPIRLASKRSSPELSLCSPKRKHKMDTGSMSEVGNC* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00205 248 Pfam AP2 domain 146 196 IPR001471 GO:0003700|GO:0006355
Pte12g00205 248 SUPERFAMILY DNA-binding domain 146 206 IPR016177 GO:0003677
Pte12g00205 248 Gene3D AP2/ERF domain 145 207 IPR036955 GO:0003700|GO:0006355
Pte12g00205 248 PRINTS Ethylene responsive element binding protein signature 170 186 IPR001471 GO:0003700|GO:0006355
Pte12g00205 248 PRINTS Ethylene responsive element binding protein signature 147 158 IPR001471 GO:0003700|GO:0006355
Pte12g00205 248 ProSiteProfiles AP2/ERF domain profile. 146 204 IPR001471 GO:0003700|GO:0006355
Pte12g00205 248 CDD AP2 145 204 IPR001471 GO:0003700|GO:0006355
Pte12g00205 248 PANTHER DNA-BINDING DOMAIN 127 223 IPR044808 GO:0003700|GO:0009873
Pte12g00205 248 SMART rav1_2 146 210 IPR001471 GO:0003700|GO:0006355
Pte12g00205 248 MobiDBLite consensus disorder prediction 213 248 - -
Pte12g00205 248 FunFam Ethylene-responsive transcription factor 2 145 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00205 Pte-Chr12 1644240 1644986 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00205 1 217 AP2-EREBP Transcription Factor Family AT4G17500 58.222 3.38e-82 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte12g00205 AP2 2.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00205 K09286 - qsa:O6P43_024387 318.546