Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00201 ATGGAAAGTTCTGATCACCTTTCAGCTCTCAATCTCATAAAGTTTCATCTTTTAGGGGAGCTGTCTCCAATCGGCAACTTCCACACCAATTTTGTTGAAACCCCATGTAACTCAAGCTCTCAATCCGAGTCTCTGTGCACCCGAACTTCAAGTTCGGACTCATCCCTTGCAGTAGATGATTTTTTCAACGAACTCATTGGTTTCTCATTTAGTTCAACGTCTTCAGAGCAATTTGAGCCCCTTCATTTCGAATCCAAAAACCATTTGGTTCACCACGCGACACCAAAATCAGAACCTTTAGTTTCCCATCGGGACAGTAGCTTTCCCCAGTTTAAAACGAATCAACAACAAGCGACATTTGACTCTCGCTCCTTTAATATGTTCGAACTCGAGTCGAAACCTCAAGTGGTCGAGAGAAAAACGAAACAAACTAGGAAACGACCGTTGAAAATCTCGGTGCCGAACAAGACGGAGCTGATCCAATTTGCCAACCCGACAAAGGAAGCAGATCCAGGACTGGCTGCGGAGAAAAGTTCCCGCCTTGAAGAGAAAAAACACTACAGAGGGGTCCGACAAAGGCCATGGGGAAAATTCGCGGCTGAAATTCGTGACCCTAACCGGAAAGGAACAAGGGTCTGGTTGGGAACTTTTGAGACAGCGATTGATGCCGCCAAAGCCTACGACCGAGCTGCCTTTAAGCTTCGAGGTGCTAAAGCAATACTCAATTTCCCGCTGGAAGCCGGAAAGTCAAGCTCCGCCGAAAGCTTAGACGCTATCGCCAACGACGGGAAACGACGTCGTGGAGAGAATGACGAGGTGGAAGTTAAGGCGGTGGTGAAGAGAGAGAAGTTGGACGACTCAAATAACGTCAGCAATTCGAGGGATGTTCCGTTAACGCCGTCAAGTTGGACGGCGGTATGGGACAGTGACGTCACAGGCATTTTCGACATTCCACTGTTATCGCCGTTATCTCCCCATCCAACATTTGGTTACCCACAACTTATGGTTGTCTAA 1014 0.4753 MESSDHLSALNLIKFHLLGELSPIGNFHTNFVETPCNSSSQSESLCTRTSSSDSSLAVDDFFNELIGFSFSSTSSEQFEPLHFESKNHLVHHATPKSEPLVSHRDSSFPQFKTNQQQATFDSRSFNMFELESKPQVVERKTKQTRKRPLKISVPNKTELIQFANPTKEADPGLAAEKSSRLEEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFETAIDAAKAYDRAAFKLRGAKAILNFPLEAGKSSSAESLDAIANDGKRRRGENDEVEVKAVVKREKLDDSNNVSNSRDVPLTPSSWTAVWDSDVTGIFDIPLLSPLSPHPTFGYPQLMVV* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00201 337 Gene3D AP2/ERF domain 185 246 IPR036955 GO:0003700|GO:0006355
Pte12g00201 337 SUPERFAMILY DNA-binding domain 186 245 IPR016177 GO:0003677
Pte12g00201 337 PANTHER DNA-BINDING DOMAIN 122 274 IPR044808 GO:0003700|GO:0009873
Pte12g00201 337 CDD AP2 185 244 IPR001471 GO:0003700|GO:0006355
Pte12g00201 337 PRINTS Ethylene responsive element binding protein signature 226 246 IPR001471 GO:0003700|GO:0006355
Pte12g00201 337 PRINTS Ethylene responsive element binding protein signature 187 198 IPR001471 GO:0003700|GO:0006355
Pte12g00201 337 SMART rav1_2 186 250 IPR001471 GO:0003700|GO:0006355
Pte12g00201 337 ProSiteProfiles AP2/ERF domain profile. 186 244 IPR001471 GO:0003700|GO:0006355
Pte12g00201 337 Pfam AP2 domain 186 236 IPR001471 GO:0003700|GO:0006355
Pte12g00201 337 MobiDBLite consensus disorder prediction 169 188 - -
Pte12g00201 337 MobiDBLite consensus disorder prediction 173 188 - -
Pte12g00201 337 FunFam Ethylene-responsive transcription factor 2 185 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00201 Pte-Chr12 1627460 1628611 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00201 78 338 AP2-EREBP Transcription Factor Family AT5G47230 47.170 2.11e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte12g00201 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00201 K09286 - qsa:O6P43_034054 322.013