Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00200 ATGGTCATCATCTTCTTCATCCTGCTGTCTTCTTTCCTCTCTGTTGAGGCTGTTGCTGCAGACTGGGACTCTCAAAAGTGCAGCCATGAAGGTCCTGATATCCAATTTCCTTTTCGACTACTCGAAGATCAAAAGCTCCGAAAGGACTTTAACGGATCTGGTTTTCAATTACTTTGCAAGGATAATTCCAACGTTGTTCCCTTCCCATCTTATGGCACAATCTTGGTTGTGAAGTCTATCTCCTACGAGCGAAGAAGACTAAATCTTCTTCATCCCGACAGCTGTACTTTCTCCTCCTCTGAAAGATATCCTTGTTTAAGTGGTTCAGATCACCATGTTTATACTGTAGACCCTTCATTATCTGTGCCTGCATCGTGCAAGGTGGTCATCACTTCTGCAATTCCTTTTGCATATAGTCCACATCTTTCTGATAATTCCTTTGTTCTTGGATTAACATGGGATTTGCCAGAATGTGAAGAAGGTAAAGGAGAATACTTCATATCGTTCCATAAGGCCCATTTCGCAGTTCTAGCTGTTGGCCTGAGTCTTATTGCAGTGATCATTGCTAGACATGCTGAACCTCGAGATATCATGATGAAGCCAGATGATGCTGAAGAAATATCTGCAGCTAGAGATTGA 639 0.4225 MVIIFFILLSSFLSVEAVAADWDSQKCSHEGPDIQFPFRLLEDQKLRKDFNGSGFQLLCKDNSNVVPFPSYGTILVVKSISYERRRLNLLHPDSCTFSSSERYPCLSGSDHHVYTVDPSLSVPASCKVVITSAIPFAYSPHLSDNSFVLGLTWDLPECEEGKGEYFISFHKAHFAVLAVGLSLIAVIIARHAEPRDIMMKPDDAEEISAARD* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00200 212 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 96 IPR046948 -
Pte12g00200 212 Pfam Wall-associated receptor kinase galacturonan-binding 25 89 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00200 Pte-Chr12 1618817 1620012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00200 27 160 C3H Transcription Factor Family AT2G25410 26.437 6.33e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00200 - - qsa:O6P43_024383 157.532