Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00196 ATGCTAACAATGACGGTTGACAAAGAAGATTTGGGGTTGAGTCTGAGTCTGGGTTATCATCAGAATCAGACTCATCACCATTTTCAGCTACATCTCATGCCATCTGCTCCGGATGTGAGCAATCCTCTGCAGTCCTCTTGGAATGATGCCTTATTCCCATCAGATCGAAACACTGAATGCCGTACCTTAGAGCCGCGATCTTTCCTGCCTGGAATCGACGTGAACCGGTTGCCTTCAACAGGTGACTGTGAAGACGAAGCCGGCGTTTCATCACCAAACAGCACCCTATCCAGTGTGAGTGGCAAGCGAAGCGAGAGAGAGATCCTCGGAGACGAGCAAGACATCGAGAGAGCTTCCTGTAGAGGAATCAGTGATGAAGAAGACGGTGAGAACTCAAGAAAAAAACTCAGACTCACTAAAGACCAGTCCGCTATTCTTGAAGAAAGCTTCAAAGAACACAACACTCTGAACCCCCAGAAGCAAAAGATGGCATTGGCGAAGCAGTTGGGTCTACGACCCAGACAAGTGGAAGTGTGGTTTCAGAACAGAAGGGCAAGGACCAAGTTGAAGCAAACTGAAGTTGACTGCGAATTCTTGAAGAGGTGCTGTGATAATCTGACGGAGGAAAACAGACGGTTGCAAAAGGAAGTGCAAGAGCTGAGAGCTCTGAAACTTTCCCCACAGTTATACATGCACATGACCCCACCTACGACTCTCACTATGTGCCCGTCGTGTGAGCGAGCTGGGGTCCCACCTTCCGCTTCATCAAACGCAGATCGTATCCGGACTCATCAAATGGGCCCAAAACCTCTGCTGAACAACCCGTGGGCCACGTCAGGCGCCCAGATTACTTGCCGGCCGTTCGATGCCCTCCGTCCTAGATCGTGA 888 0.5023 MLTMTVDKEDLGLSLSLGYHQNQTHHHFQLHLMPSAPDVSNPLQSSWNDALFPSDRNTECRTLEPRSFLPGIDVNRLPSTGDCEDEAGVSSPNSTLSSVSGKRSEREILGDEQDIERASCRGISDEEDGENSRKKLRLTKDQSAILEESFKEHNTLNPQKQKMALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCDNLTEENRRLQKEVQELRALKLSPQLYMHMTPPTTLTMCPSCERAGVPPSASSNADRIRTHQMGPKPLLNNPWATSGAQITCRPFDALRPRS* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00196 295 ProSiteProfiles 'Homeobox' domain profile. 129 190 IPR001356 GO:0003677
Pte12g00196 295 FunFam Homeobox-leucine zipper protein HAT22 137 184 - -
Pte12g00196 295 Pfam HD-ZIP protein N terminus 7 107 IPR006712 GO:0005634
Pte12g00196 295 PRINTS Lambda-repressor HTH signature 161 170 IPR000047 GO:0003677
Pte12g00196 295 PRINTS Lambda-repressor HTH signature 170 186 IPR000047 GO:0003677
Pte12g00196 295 Pfam Homeobox associated leucine zipper 190 224 IPR003106 GO:0006355|GO:0043565
Pte12g00196 295 MobiDBLite consensus disorder prediction 86 102 - -
Pte12g00196 295 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981|GO:0006355
Pte12g00196 295 SMART halz 190 233 IPR003106 GO:0006355|GO:0043565
Pte12g00196 295 SUPERFAMILY Homeodomain-like 125 191 IPR009057 -
Pte12g00196 295 MobiDBLite consensus disorder prediction 72 111 - -
Pte12g00196 295 Gene3D - 137 188 - -
Pte12g00196 295 SMART HOX_1 131 194 IPR001356 GO:0003677
Pte12g00196 295 Pfam Homeodomain 133 188 IPR001356 GO:0003677
Pte12g00196 295 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 11 260 - -
Pte12g00196 295 CDD homeodomain 133 191 IPR001356 GO:0003677
Pte12g00196 295 Coils Coil 189 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00196 Pte-Chr12 1601566 1603305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00196 4 296 Homeobox Transcription Factor Family AT5G47370 58.442 2.01e-105 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte12g00196 HD-ZIP_N 3.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00196 K09338 - qsu:112032861 407.527