Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00192 ATGACCAGGCGGTGCTCGCATTGTAGTCATAATGGTCACAACTCTAGGACGTGTCCAAATCGGGGAGTCAAGCTTTTCGGAGTTCGATTGACTGATGGGTCTATCCGGAAGAGTGCAAGTATGGGTAACCTCAGCCACTACGCCGGGTCCACTTCGGGTGTTCTGAATACAGGTTCCAATAATCCGGGTTCACCGGGTGAGACCCCTGATCATGTTGCCACTGCTGACGGATATGCCTCTGAGGATTTCGTTCCTGGCTCATCATCAAGTTGTCGTGAAAGAAAAAAAGGAGTTCCATGGAGTGAAGAAGAACATAGGATGTTCTTGCTTGGGCTGCAAAAGCTTGGAAAAGGTGATTGGCGGGGTATTGCGCGGAACTATGTTATATCAAGGACACCTACTCAAGTAGCCAGCCATGCTCAGAAATATTTTATCAGGCAAAGCAATGTCTCTAGGAGAAAACGACGCTCCAGCTTGTTTGATATAGTAGCAGATGAGCCAGCTGATACTGCAATGGCATCGGAGCTGCAAGACTTTGTGTCCGCTGACCAACCAAATGTGGAAACTGCAGAGATCAAAGACACCGTGCCTGCACCTGCGCCACTAGATGAAGAATGTGAATCAATGGATTCCGCCAACTCAAATGATGGAGAGCCCGCTGCTCTAAATCCAGAAAGTTCACAAGCATCATACCCTGTGATATGTCCTGCATATTATTCACCTTTCTTCCCATTCCCTTTGCCAATGTGGTCTGGATGCAGTATGGAGCCTGCTAATCAAGAAACCCATGAGGTGGTGAAGCCAACGGCAATACACTCTAAAAACCCAATTAATGTAGATGAATTGGTTGGAATGTCCAAACTGAGTTTAGGTGAATCCATTGGTCACTCGGGTCCCTCCTCCCTTTCGTTAAAGCTCCTGGAAGGGTCATCTAGGCAGTCAGCTTTTCATGCAAATCCACCCTCAGGTAGTTCAAACATCAATGGTAAAGTGATCCACGCTGTTTGA 1008 0.4732 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLSHYAGSTSGVLNTGSNNPGSPGETPDHVATADGYASEDFVPGSSSSCRERKKGVPWSEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADEPADTAMASELQDFVSADQPNVETAEIKDTVPAPAPLDEECESMDSANSNDGEPAALNPESSQASYPVICPAYYSPFFPFPLPMWSGCSMEPANQETHEVVKPTAIHSKNPINVDELVGMSKLSLGESIGHSGPSSLSLKLLEGSSRQSAFHANPPSGSSNINGKVIHAV* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00192 335 ProSiteProfiles SANT domain profile. 100 148 IPR017884 -
Pte12g00192 335 Pfam Myb-like DNA-binding domain 99 144 IPR001005 -
Pte12g00192 335 ProSiteProfiles Myb-like domain profile. 92 144 IPR001005 -
Pte12g00192 335 MobiDBLite consensus disorder prediction 52 67 - -
Pte12g00192 335 Gene3D - 98 150 - -
Pte12g00192 335 SMART sant 96 146 IPR001005 -
Pte12g00192 335 MobiDBLite consensus disorder prediction 78 97 - -
Pte12g00192 335 PANTHER TRANSCRIPTION FACTOR KUA1 3 274 - -
Pte12g00192 335 CDD SANT 99 144 IPR001005 -
Pte12g00192 335 NCBIfam myb-like DNA-binding domain, SHAQKYF class 95 147 IPR006447 GO:0003677
Pte12g00192 335 MobiDBLite consensus disorder prediction 212 226 - -
Pte12g00192 335 SUPERFAMILY Homeodomain-like 94 149 IPR009057 -
Pte12g00192 335 MobiDBLite consensus disorder prediction 52 71 - -
Pte12g00192 335 MobiDBLite consensus disorder prediction 189 226 - -
Pte12g00192 335 FunFam transcription factor MYB1R1 98 149 - -
Pte12g00192 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 148 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00192 Pte-Chr12 1565896 1568118 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pte12g00192 Myb_DNA-binding 3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00192 - - ccaj:109807943 540.421