Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00178 ATGGTGAAGATAGCAATCGGGAACGCTGGTGACTCTTTCAGCGTAAATTCACTTAAGGCATATCTAGCTGAATTCATAGCCACCCTTCTTTTTGTGTTCGCAGGAGTTGGCTCAGCCCTTGCCTACGGTAAGCTCACAGCAGACGCAGCCTTGGACCCGCCGGGCCTGGTGGCAGTAGCTGTAGCTCATGCATTTGCATTGTTCGTGGGGGTATCAATTGCAGCCAATATCTCAGGTGGTCATTTGAACCCAGCTGTAACATTTGGATTGGCTGTTGGAGGCAACATCACAATCCTCACTGGTATATTCTACTGGATTGCCCAATTGCTTGGCTCTGTTGTTGCTTGCCTCCTACTCCAATTCGTCACAGGCGGCAAGAGTGTACCAACTCATGGAGTTGCTACAGGAGTTGGAGCTATTGAAGGTGTGGTCTTCGAGATTGTAGTCACTTTTGCATTAGTGTACACAGTGTACGCTACTGCTGCGGACCCAAAGAAGGGCTCGTTGGGCACAATAGCCCCCATCGCAATTGGATTCATTGTAGGAGCCAACATTTTAGCTGCTGGGCCATTTAGTGGTGGCTCAATGAACCCAGCTCGATCATTTGGCCCTGCTGTTGTCGCCGGAAACCTCACAGACCACTGGATCTACTGGGTTGGACCATTGGTTGGAGGAGGACTTGCAGGGCTGATCTATGGTGACATCTTCATTGGTAGCTACAGCCCAGCCCCTACCTCAGACAACTACCCCTGA 753 0.506 MVKIAIGNAGDSFSVNSLKAYLAEFIATLLFVFAGVGSALAYGKLTADAALDPPGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTFGLAVGGNITILTGIFYWIAQLLGSVVACLLLQFVTGGKSVPTHGVATGVGAIEGVVFEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGNLTDHWIYWVGPLVGGGLAGLIYGDIFIGSYSPAPTSDNYP* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00178 250 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte12g00178 250 CDD MIP 19 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte12g00178 250 FunFam Probable aquaporin TIP1-1 2 248 - -
Pte12g00178 250 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Pte12g00178 250 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte12g00178 250 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte12g00178 250 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte12g00178 250 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte12g00178 250 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte12g00178 250 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte12g00178 250 PANTHER AQUAPORIN-8 4 238 IPR034294 -
Pte12g00178 250 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte12g00178 250 SUPERFAMILY Aquaporin-like 13 240 IPR023271 -
Pte12g00178 250 Gene3D Glycerol uptake facilitator protein. 2 242 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00178 Pte-Chr12 1488045 1489124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00178 1 247 Major Intrinsic Protein MIP AT5G47450 83.401 3.17e-146 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00178 K09873 - tcc:18606242 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00178 12 1488045 1489124 Pte12g00178 12 1488045 1489124 RCT