Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00165 ATGGACAGGCATAAATGCAAGCTTTGCTCTAAAACGTTCGCAAATGGCAGAGGGTTGGGGGGGCACATGAAGGTCCATTTGGCCAACGTCTCTCTATCTCCGAAGACCGAGCTACATCAACGTTTGGAGTATCACATCGAGTCAACTCCATCTTCTTCCTTTTCTTCTGGGGAAGAAGATGAGACCGAAGGTGAAGAGGAAGTGGAAAGACACCTCGAAGTTGAGGAAAAAGCTTTGGTTTATGCGTTGAGAGAGAATCCCAAGAAAAGTTTCATACTTGCAGATCCTGAGTTCTCTTTTGCAGTTGATGTGGATGGCGGTGCTGTGGTCCAGGACCGAGAGAGTGAGACTGAGTCAAAGAACCCAACTCGTAGACGAACCAAGAGGAACCGTGGTAAACCGGTCACCGTGGGCATACAAGACCTCAAGGAGATCAACCGGGACATGGAACTGAAGAAGCCCAGGTTGGAAAAAGGGAGTTCTTCTGAGTCTCCATCCGAGCCAGAACCTGTGAGCTCTGTGTCTTACACTTCCCCTGAAGAAGACGTTGCTATGTGCCTCATGATGCTCTCAAGGGACACATGGACAAGAAACGTCGAGGAACAAGACCATGTTGAAGAAGAAGTACGCACATTGGAGAAGAAAAGAAAAGGACCAAAGGATGACGCAAAATCCAAAAGAATTCGAGGAAAGCATCAATGTGAAAACTGCAGAAAAACGTTTAGATCCTCCCGTGCATTGAACAGTCACAAAAGGATTTGCTTTCCTGATCAAACACTTGCAGGTAACAGCAATGAGAAAATTTTCGAATGCCCATTTTGTTTCCAATTGTTTGGGTCGGGACAAGCACTTGGAGGACACAAGAGATCTCATCTCATTGGCCTATCATCGACGACTACTTCTGTTCCTGCTAAAAACAGAGAGACTTTTTTAGATCTCAACTTGCCTGCTCCCGCTGAAGACGATGACTTCAGTGTGGTTTCTGAATCATAG 993 0.4622 MDRHKCKLCSKTFANGRGLGGHMKVHLANVSLSPKTELHQRLEYHIESTPSSSFSSGEEDETEGEEEVERHLEVEEKALVYALRENPKKSFILADPEFSFAVDVDGGAVVQDRESETESKNPTRRRTKRNRGKPVTVGIQDLKEINRDMELKKPRLEKGSSSESPSEPEPVSSVSYTSPEEDVAMCLMMLSRDTWTRNVEEQDHVEEEVRTLEKKRKGPKDDAKSKRIRGKHQCENCRKTFRSSRALNSHKRICFPDQTLAGNSNEKIFECPFCFQLFGSGQALGGHKRSHLIGLSSTTTSVPAKNRETFLDLNLPAPAEDDDFSVVSES* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00165 330 SMART c2h2final6 232 252 IPR013087 -
Pte12g00165 330 SMART c2h2final6 269 291 IPR013087 -
Pte12g00165 330 SMART c2h2final6 4 26 IPR013087 -
Pte12g00165 330 Gene3D Classic Zinc Finger 229 291 - -
Pte12g00165 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 259 IPR013087 -
Pte12g00165 330 MobiDBLite consensus disorder prediction 202 229 - -
Pte12g00165 330 MobiDBLite consensus disorder prediction 110 178 - -
Pte12g00165 330 MobiDBLite consensus disorder prediction 163 178 - -
Pte12g00165 330 SUPERFAMILY beta-beta-alpha zinc fingers 232 291 IPR036236 -
Pte12g00165 330 SUPERFAMILY beta-beta-alpha zinc fingers 3 28 IPR036236 -
Pte12g00165 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 269 291 IPR013087 -
Pte12g00165 330 MobiDBLite consensus disorder prediction 46 69 - -
Pte12g00165 330 ProSitePatterns Zinc finger C2H2 type domain signature. 271 291 IPR013087 -
Pte12g00165 330 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 329 IPR044303 GO:0006355
Pte12g00165 330 MobiDBLite consensus disorder prediction 143 162 - -
Pte12g00165 330 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Pte12g00165 330 Pfam C2H2-type zinc finger 232 252 - -
Pte12g00165 330 Pfam C2H2-type zinc finger 269 292 - -
Pte12g00165 330 Pfam C2H2-type zinc finger 3 27 - -
Pte12g00165 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00165 Pte-Chr12 1399988 1401193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00165 1 327 C2H2 Transcription Factor Family AT3G60580 33.239 8.32e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte12g00165 zf-C2H2_6 2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00165 - - qsa:O6P43_034089 322.013