Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00149 ATGTCCTCCTCTTCCACTAGCTTGTCGTTGGACCACCTCCCTCAATCCGAGCAGCTCTGTTATGTTCATTGCAATATCTGCGACACTGTACTCGCGGTAAGCGTTCCTTGCACCAGTTTATTCAAAACTGTTACAGTTCGATGTGGCCACTGCACAAACCTCCTGCCCGTGAATATGCGTGGAATGCTCTTACCTTCAGCAAATCAGTTTCATTTGGGTCACACCTTCTTCTCTCCACCCCATAACTTTCTGGAGGAAACACCAAATGTATCCCCTAATTTCTTAATAAGCCAGACTGCAGGAAATGAATACAACATCAATATGCCAGCTCGGGCTAATATTCCCGACCAGTTTCCAAGGCCACCAGTCATTAACAGACGTGAGATCTTAACTCCAGAGAAGAGACAGCGAGTCCCCTCAGCATACAACCGCTTCATTAAGGAAGAAATCCAGCGCATCAAGTCTGTCAATCCAGATATAAGTCACAGAGAAGCATTCAGCGCTGCTGCCAAGAATTGGGCTCACTTCCCACACATCCACTTTGGCCTCATGCCGGATCAGGCAGTGAAGAAGACTTGTGTGCGCCAGCAGGAAGGAGAGGATGTTTTGATGAAAGATGGATATCTGACTTCGGCCAATGTGGGCGTCACTCCCTACTAA 660 0.4773 MSSSSTSLSLDHLPQSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGMLLPSANQFHLGHTFFSPPHNFLEETPNVSPNFLISQTAGNEYNINMPARANIPDQFPRPPVINRREILTPEKRQRVPSAYNRFIKEEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQAVKKTCVRQQEGEDVLMKDGYLTSANVGVTPY* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00149 219 CDD HMG-box_SF 137 173 - -
Pte12g00149 219 FunFam Axial regulator YABBY 128 199 - -
Pte12g00149 219 PANTHER PROTEIN YABBY 6-RELATED 1 192 IPR006780 GO:0007275
Pte12g00149 219 Pfam YABBY protein 15 183 IPR006780 GO:0007275
Pte12g00149 219 SUPERFAMILY HMG-box 121 176 IPR036910 -
Pte12g00149 219 Gene3D High mobility group box domain 126 194 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00149 Pte-Chr12 1167735 1170697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00149 26 217 C2C2-YABBY Transcription Factor Family AT4G00180 55.714 2.34e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pte12g00149 YABBY 1.2e-67 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00149 K25796 - cave:132176469 364.77