Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00148 ATGAATTCATTTTCGCATGTTCCACCAGGCTTTCGGTTTCACCCCACCGATGAAGAACTAGTTGATTATTATCTCAGAAAGAAAGTCGCTAATAAAAAGATTGATCTAAATGTCATCAAAGATGTTGATCTTTATAGAATTGAGCCTTGGGATCTTGAAGAACTATGCAAAATAGGAAGTGAAGAACAAAATGACTGGTATTTCTTTAGCCATAAAGATAAGAAGTACCCAACTGGAACTCGAACCAATAGAGCTACCAAAGCTGGATTCTGGAAAGCTACTGGAAGAGATAAGTCAATTTACTCTAGGCATTGTCTAGTTGGCATGAGAAAGACTCTGGTGTTTTACAAAGGAAGAGCTCCTAACGGACTAAAGTCTGATTGGATTATGCATGAGTATCGTCTAGAAACCAACGAGAATGGAACTCCTCAGGAAGAAGGTTGGGTTGTGTGTAGAGTGTTCAAGAAGAAAATGCCTACTATGCGCAAAATGGGTGAATATGAGTCGCCTTGCTGGTATGATGAACAAGTTTCCTTCATGCAAGAATCTCCAAGGCGAATGGGTCACTCTCACCCGTATGCTTCATACCAGCAACAATACCCATGCAAGCAGGAGTTACAATTGCAGTACAGCATGGTGCCACAACAAGACGCTTTCCTTCAACTCCCTCAACTTGAAAGCCCTACGGTTCCTCAATCTGCCACAAGTTTAAGTTGCAATTCAATTTTCCCTTACAGCTACGAGAGAAATAACAGTGGAAGCACTTTGCAGTCCTCAACAATCACCCAAGAAAGGCAGATGGAACCTTCCCTTCAACAAAATCTGAACTCACTTTACTGTAACAACGATCAAGCAGTGGATCAAGTGACCGATTGGAGGGTACTCGATAAATTTGTTGCTTCACAGCTAAGTCATGATCCGGATGCTTCGAAAGATGCTAGTGCTGCCAATGCTGCTGTCCTCCATGTAGCTGAACAAATCAATCTTCTATCCAGTGAAACCAAGAGGCCTGAAATTACACAGGAGTATGGCTCCACAGCGGGCTCAAGTTGCCCTATTGAATTATGGAAGTGA 1074 0.4227 MNSFSHVPPGFRFHPTDEELVDYYLRKKVANKKIDLNVIKDVDLYRIEPWDLEELCKIGSEEQNDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKSIYSRHCLVGMRKTLVFYKGRAPNGLKSDWIMHEYRLETNENGTPQEEGWVVCRVFKKKMPTMRKMGEYESPCWYDEQVSFMQESPRRMGHSHPYASYQQQYPCKQELQLQYSMVPQQDAFLQLPQLESPTVPQSATSLSCNSIFPYSYERNNSGSTLQSSTITQERQMEPSLQQNLNSLYCNNDQAVDQVTDWRVLDKFVASQLSHDPDASKDASAANAAVLHVAEQINLLSSETKRPEITQEYGSTAGSSCPIELWK* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00148 357 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Pte12g00148 357 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 255 - -
Pte12g00148 357 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Pte12g00148 357 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Pte12g00148 357 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Pte12g00148 357 FunFam NAC domain-containing protein 16 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00148 Pte-Chr12 1155260 1158167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00148 1 355 NAC Transcription Factor Family AT1G62700 55.419 5.19e-140 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte12g00148 NAM 7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00148 - - tcc:18606319 577.4