Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00141 ATGGGGAGGCAACCTTGTTGTGACAAACTTGGTGTGAAAAAGGGTCCCTGGACCGTTGAGGAAGACAAGAAGCTCATCAGCTTTATTCTCAGTAATGGCCAGTGTTGTTGGCGTGCTGTCCCCAAGCTTGCCGGCCTCCGACGTTGTGGCAAGAGCTGCCGCCTCCGTTGGACTAACTACCTCCGCCCTGACCTAAAGAGAGGTCTGCTTTCAGAAGCTGAGGAGCAGTTGGTCATTGATCTCCATGCCAGACTTGGCAATAGGTGGTCGAAAATTGCATCCAGGTTGCCGGGAAGGACAGACAACGAGATTAAAAATCACTGGAATACGTATATCAAGAAGAAGCTTCTTAAGATGGGAATCGATCCCGTCACTCATGAACGCGTTGATAAGCAGCAACAGATAACTATGCCTAAGGAGACTGCTTCAGTTTCTGAAGTACTTTCAACTCAATCTGGCAGCAACCTTCATGTGAAGGAAACGGATGGGATCCAGCTGGTGAATCATAATCCAGATGACAACTCATCAAACACAAACTCACCAACGACTGAAAACTCTACAAGCGAGGAGACCTCCTTTTTGATCGATACCATTTGCAGTGATGAGTCTTTGATGAATAGCTTATGGCTTGTGGAAACTCCTCTTGCTGATGATGACCTATGGGACAACTTTGCCAAGCAAGAGAACGACAATACCATGAACAAAGAGACATGCTTGCCATCCTGGGAGGAAGACAACTTTGCCAATTGGCTACTGGACTGTCAGGATTTTGGGATTCAAGATTTTGGTTTCAATTGCTTCAATGAGGTGGAATCAAGTGCTTCAAGCATGTTACTAATGGAAGGAAATAATGATAATAATAATAATAATAATAACTAG 879 0.4494 MGRQPCCDKLGVKKGPWTVEEDKKLISFILSNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLSEAEEQLVIDLHARLGNRWSKIASRLPGRTDNEIKNHWNTYIKKKLLKMGIDPVTHERVDKQQQITMPKETASVSEVLSTQSGSNLHVKETDGIQLVNHNPDDNSSNTNSPTTENSTSEETSFLIDTICSDESLMNSLWLVETPLADDDLWDNFAKQENDNTMNKETCLPSWEEDNFANWLLDCQDFGIQDFGFNCFNEVESSASSMLLMEGNNDNNNNNNN* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00141 292 FunFam MYB transcription factor 11 67 - -
Pte12g00141 292 Gene3D - 70 144 - -
Pte12g00141 292 Gene3D - 12 67 - -
Pte12g00141 292 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Pte12g00141 292 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte12g00141 292 SMART sant 13 63 IPR001005 -
Pte12g00141 292 SMART sant 66 114 IPR001005 -
Pte12g00141 292 CDD SANT 16 61 IPR001005 -
Pte12g00141 292 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte12g00141 292 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 221 - -
Pte12g00141 292 FunFam MYB transcription factor 68 129 - -
Pte12g00141 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte12g00141 292 MobiDBLite consensus disorder prediction 135 190 - -
Pte12g00141 292 CDD SANT 71 112 IPR001005 -
Pte12g00141 292 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte12g00141 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte12g00141 292 MobiDBLite consensus disorder prediction 130 190 - -
Pte12g00141 292 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00141 Pte-Chr12 1120242 1122175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00141 1 274 MYB Transcription Factor Family AT4G12350 54.110 8.99e-98 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte12g00141 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00141 K09422 - gmx:100786965 370.548