Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00125 ATGGAGGCAAGAGATGGTGTTACTAGTGGGGTCACGGTCGTGGGATCGGACGCTCCGTCCGAATATCATGTGGCTCCAAGGACGGAAATCACAGTTCGGACCGTTGGACAGACGATGGCAGCGGCGGCTCTGGACTCTCAGATGACAGGACAACCACCTCAGGCGGTGGCAGTCACGACGATGCCGGAAAAGAAAAAGAGGGGTAGGCCCAGAAAATACGGAGCTGATGGTTCGGTGTCTGTAGCTCTCTCTCCAAAGCCCATATCTTCAGCTCCGCCACCTTCAGTGATCGATTTCTCGGTTGACAAGCGTGGAAAAGTTCGGCCAGCTGGCTCAGTAATCAAACCAAAATTTGAGGTGGAGAACATAGGTGAATGGGTAGCATGCTCTGTTGGAACTAATTTTACCCCACATATTATCACAGTCAACGCTGGCGAGGATGTTACAATGAAAGTCATATCATTTTCCCAACAAGGTCCACGAACAATATGCATTCTCTCTGCAAATGGTGTCATTTCAAGTGTAACACTTCGTCAGCCTGATTCATCTGGGGGTACCTTGACATATGAGGGTCGATTTGAGATACTGTCACTATCAGGGTCATTCATGCCGAATGAGATTGGAGGAACAAGGAGCAGAGCAGGTGGAATGAGTGTCTCTTTAGCAAGTCCCGATGGCCGTGTTGTTGGGGGTAGTGTAGCTGGCCTACTCGTAGCCGCAAGCCCAGTGCAGGTCGTTGTAGGTAGTTTTTTGGCGGGGAACCAACATGAGCAGACGACAAAGAAACAGAAACATGAAATGACAGTAACATTTACACCTGCTGCTGCTGTTCCTATATCTACTGCCGAACCTAAACCTCACCTCTCAACTTCCTCGTCTTTCCGAGAGGATAATTGGTCTGCTATGCCGTCAGATACAAGGAATTAG 927 0.493 MEARDGVTSGVTVVGSDAPSEYHVAPRTEITVRTVGQTMAAAALDSQMTGQPPQAVAVTTMPEKKKRGRPRKYGADGSVSVALSPKPISSAPPPSVIDFSVDKRGKVRPAGSVIKPKFEVENIGEWVACSVGTNFTPHIITVNAGEDVTMKVISFSQQGPRTICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPNEIGGTRSRAGGMSVSLASPDGRVVGGSVAGLLVAASPVQVVVGSFLAGNQHEQTTKKQKHEMTVTFTPAAAVPISTAEPKPHLSTSSSFREDNWSAMPSDTRN* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00125 308 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 38 283 IPR039605 GO:0003680
Pte12g00125 308 Gene3D - 137 270 - -
Pte12g00125 308 MobiDBLite consensus disorder prediction 278 308 - -
Pte12g00125 308 MobiDBLite consensus disorder prediction 45 79 - -
Pte12g00125 308 MobiDBLite consensus disorder prediction 284 308 - -
Pte12g00125 308 ProSiteProfiles PPC domain profile profile. 132 272 IPR005175 -
Pte12g00125 308 Pfam Plants and Prokaryotes Conserved (PCC) domain 137 250 IPR005175 -
Pte12g00125 308 SUPERFAMILY AF0104/ALDC/Ptd012-like 134 255 - -
Pte12g00125 308 FunFam AT-hook motif nuclear-localized protein 1-like 137 268 - -
Pte12g00125 308 CDD DUF296 136 250 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00125 Pte-Chr12 1045440 1048351 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00125 6 308 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 60.843 8.43e-122 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00125 - - qsa:O6P43_024280 453.366