Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00116 ATGAGAAGACACTGCCCACTTCGTCTCTCTCATGCTCTCCTTTGTTTCACAGTGTGTCTTGTTTCTTCTATCAAGGTCTTCCCAGCTACTGAGAAAGAGATTTTGCTTCAATTCAAGGGCAACATTACAGATGATCCTAAGAACAGTTTGGGTTCATGGGTTGTTAATGGATACCCTTGTGAAGATTATGTCGGTGTTTCTTGCAACTCTCAAGGATTCGTGGAAAGGATCGTTCTTTGGAACACTAGCTTGGCTGGACTATTGTCTCCGGCGCTGTCAGGTTTGAAGTTTTTGAGGTCTCTGGCATTGTTTGGAAATCGTTTTTCAGGTAACATCCCACAAGAATATGCTTCCTTACAAACATTGTGGAAAATCAATTTGAGCAGCAATGCCTTATCTGGGTCTATCCCGGAGTTTATTGGGGATTTGCCAAACATAAGGTTTATTGATTTGTCAAATAATGGTTTTACTGGAGAAATTCCTCGAGCTTTATTTAAGAACTGTAACAAGACCAAGTTCGTTTCCCTTTCTCATAATAGTATTTCGGGTTCAATACCCGAATCATTTGTGAATTGTATTAACCTTGAAGGCTTTGATTTTTCTTTCAACAACCTTACCGGAGATATTCCTTCACGTATCTGTGACTTTCCAATGTTGTCATACATGTCTTTGAGAAGCAATGTCTTTACTGGAGCTGTGGGAAAGATAATTTCAACATGCCAAAGGCTGACGCATTTGGATGTTAGTAGTAATTTGTTTAGTGGTTCTGCCCCGTGGAATGTCCTCGGTTTGCAAAATCTAACATACTTTAATATATCTAGCAATGGATTTCTTGGAGAAATTCCGGATATTTCTACCTGCAGTGAAAGATTAGAATTTTTGGATGCTTCAGTTACTGGTTTGGGTGGGGACCTGAAAGCCGGCATAACAAAATGCAGGAACCTTAAGGTTTTGAACTTGGAATCAAACAGACTGAATGGGGTAATCCCAATTGGCATTGGTGATCTGAAAGCACTGTTGGTTATGAAATTAGGTAATAATTCTATAGGTGGAACCATTCCAAAGGGAATCGGAGATATTGATCTGCTTCAAGTTCTGGATTTGCACAACCTCCAGCTTGCTGGTGAAATTCCTGATGATATAAGCAAATGCAGGTTCCTTCTTGAGCTGGACATTTCTGGCAATGCATTAGAAGGAGGAATACCTCAGACCCTCTACAACATGACTTATCTGGAAGCCTTGGACTTGCACCACAATCTTCTGAACGGAAGCATCCCTGCTAGCCTGGGAAACTTGTCGAAACTGCAATACCTAGATTTATCACAAAATTCACTTGTTGGCACAATCCCTCCTTCCCTTGGCAACCTTGTTATTTTGAATCATTTTAACCTATCATTCAATAATCTCTCAGGCACGATTCCTCCCGTTGCAAAATTACAAGGTTTTGGTCCATCTGCATTTTCAAACAATCCCTTTCTCTGTGGAGCACCTTTGGACAATCCCTGCTCACCAAATGGCAATGCACCGACAGCAATGTCTAAAAAAGCAAAGGTCTTAAGTGTCTCTTCTATTATTGCCATTGTTGCTGCTGCAGTAATTCTTATTGGGGTTTGTTTGGTATCCATACTCAACATCAGGGCACGCAGGAGAAAAGAAACCGATAGGACAATAGTTGTGGAGAGCACGCCCCAAGAATCAACAGATTCCAGTGTTATAATCGGAAAACTGGTTCTCTTCAGCAAAAGTTTACCCTCAAAATATGAGGACTGGGAGGCTGGTACCAAAGCCTTGCTTGACAAGGAATGTTTTATTGGTGGTGGATCCATTGGTACAGTATACCGGGCTAATTTTGAAGGTGGGGTCTCGATTGCAGTGAAAAAGCTTGAGACTTCAGGAAGAATAAGAAATCAAGAAGAATTTGAGAATGAAATAGGCCGACTTGGGACTATGCGACACCCGCATTTGGTAGCTTGTCAAGGTTACTACTGGTCCTCCAAAATGCAGTTGATTCTATCAGAGTTTGTCCCAAATGGAAACTTGTATGATAATCTGCATGGCGTCAACTATCCTGGTCCAAGCACCAGTACTGGTAACAGTGAATTGGATTGGTCTAAGAGATTCCAAATCGCCCTTGGAACAGCGAGAGCCCTTGCTTACCTTCACCATGATTGTAGACCGCCAATTCTCCATCTGAACATCAAATCCACCAACATACTCTTGGATGAGAATTATGAGGCTAAGTTGTCTGATTATGGATTGGTGAAACTACTTCCGATTTTGGATAATTATGGTCTAACGAAATTCCATAATGCAGTTGGGTACGTTGCACCAGAGTTGGCTCAAAGTTTTAGACTAACTGAGAAATGTGATGTTTACAGTTTTGGTGTAGTTCTCCTGGAGCTGGTAACAGGAAGGAAACCGGTGGAAAGCCCTTCAGCAAGTGAGGTGGTTGTATTGTGCGAACATGTTAGAATGATGTTGGAGAATGGCTCTGCTTCGAACTGCTTTGACCCAAGTTTGCGCGGATATGCAGAGAATGAGTTAATTCAGGTCATGAAGTTAGGTTTGATCTGCAGTTCTGAGGTTCCTGAGAGACGACCAAGCATGGCTGAGGTTGTGCAGGTGCTTGAGTCAATCAGAAATGGTATGGAATTTCAATAG 2661 0.4179 MRRHCPLRLSHALLCFTVCLVSSIKVFPATEKEILLQFKGNITDDPKNSLGSWVVNGYPCEDYVGVSCNSQGFVERIVLWNTSLAGLLSPALSGLKFLRSLALFGNRFSGNIPQEYASLQTLWKINLSSNALSGSIPEFIGDLPNIRFIDLSNNGFTGEIPRALFKNCNKTKFVSLSHNSISGSIPESFVNCINLEGFDFSFNNLTGDIPSRICDFPMLSYMSLRSNVFTGAVGKIISTCQRLTHLDVSSNLFSGSAPWNVLGLQNLTYFNISSNGFLGEIPDISTCSERLEFLDASVTGLGGDLKAGITKCRNLKVLNLESNRLNGVIPIGIGDLKALLVMKLGNNSIGGTIPKGIGDIDLLQVLDLHNLQLAGEIPDDISKCRFLLELDISGNALEGGIPQTLYNMTYLEALDLHHNLLNGSIPASLGNLSKLQYLDLSQNSLVGTIPPSLGNLVILNHFNLSFNNLSGTIPPVAKLQGFGPSAFSNNPFLCGAPLDNPCSPNGNAPTAMSKKAKVLSVSSIIAIVAAAVILIGVCLVSILNIRARRRKETDRTIVVESTPQESTDSSVIIGKLVLFSKSLPSKYEDWEAGTKALLDKECFIGGGSIGTVYRANFEGGVSIAVKKLETSGRIRNQEEFENEIGRLGTMRHPHLVACQGYYWSSKMQLILSEFVPNGNLYDNLHGVNYPGPSTSTGNSELDWSKRFQIALGTARALAYLHHDCRPPILHLNIKSTNILLDENYEAKLSDYGLVKLLPILDNYGLTKFHNAVGYVAPELAQSFRLTEKCDVYSFGVVLLELVTGRKPVESPSASEVVVLCEHVRMMLENGSASNCFDPSLRGYAENELIQVMKLGLICSSEVPERRPSMAEVVQVLESIRNGMEFQ* 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00116 886 Gene3D Ribonuclease Inhibitor 386 502 IPR032675 -
Pte12g00116 886 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g12460 167 505 - -
Pte12g00116 886 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 28 166 - -
Pte12g00116 886 SUPERFAMILY L domain-like 165 494 - -
Pte12g00116 886 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Pte12g00116 886 SUPERFAMILY Outer arm dynein light chain 1 76 162 - -
Pte12g00116 886 Gene3D Transferase(Phosphotransferase) domain 1 675 885 - -
Pte12g00116 886 FunFam Putative LRR receptor-like serine/threonine-protein kinase 575 674 - -
Pte12g00116 886 SUPERFAMILY Protein kinase-like (PK-like) 599 877 IPR011009 -
Pte12g00116 886 Gene3D Ribonuclease Inhibitor 28 178 IPR032675 -
Pte12g00116 886 ProSiteProfiles Protein kinase domain profile. 598 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00116 886 PANTHER OS05G0588300 PROTEIN 214 330 - -
Pte12g00116 886 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 675 885 - -
Pte12g00116 886 Gene3D Ribonuclease Inhibitor 287 384 IPR032675 -
Pte12g00116 886 Gene3D Ribonuclease Inhibitor 179 286 IPR032675 -
Pte12g00116 886 CDD STKc_IRAK 604 879 - -
Pte12g00116 886 Gene3D Phosphorylase Kinase; domain 1 561 674 - -
Pte12g00116 886 Pfam Protein tyrosine and serine/threonine kinase 603 876 IPR001245 GO:0004672|GO:0006468
Pte12g00116 886 Pfam Leucine rich repeat 313 370 IPR001611 GO:0005515
Pte12g00116 886 Pfam Leucine rich repeat 389 445 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00116 Pte-Chr12 983393 986178 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00116 13 884 Receptor kinase-like Gene Family AT1G62950 64.342 0.0 1103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Pte12g00116 PK_Tyr_Ser-Thr 2.5e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00116 - - qsa:O6P43_034163 1341.64