Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00108 ATGGTTAGAGGAAAAACTCAGATGAAGCGCATAGAAAACGATACAAGCAGACAAGTTACCTTTGCGAAGAGAAGAAATGGGCTGCTTAAGAAGGCGTTTGAGCTATCTGTGCTTTGTGATGCTGAGGTTGCTCTGATTATATTTTCTCCAAGAGGGAGGCTGTATGAGTTCTCCAGCTCCAGTATAAACAAAACCATTGAGCGTTACAAGAAGAAGGTCAAAGACCTAGGTCTCGTCAACAAAGCAACTCCAGAAATGGCGCAGCATGTGAAAGAAGGTTCCATAAACATGGAGAAACAGATCGAGCAACTTGAAACTTCTAAAAGAAGGCTCCTCGGAAATGGTCTTGACGCATGTTCTCTGCATGAGTTACAACAGATAGAAAACCAGTTGGAACGAAGCTTGAGCAAAATCAGAGGGAGAAAGAGCCAGTTATTCAAAGAGCAAATTGACAGTCTAAAAGAGCAGGAGAAGTGCCTGTTGGAAGAAAATACCAAACTAAAAGAAGAGTTTCGCAAAGCTCAACTGGTGCAGCCATTAAGTGATCAGCAGCAAACTGAATCACAGAAGGAAGAAAGAATCTATGTGGAGACAGAGTTATTTATTGGACCTCCTGAGCACCGAACATCAAGAAAAGCACAAAATTGA 648 0.4198 MVRGKTQMKRIENDTSRQVTFAKRRNGLLKKAFELSVLCDAEVALIIFSPRGRLYEFSSSSINKTIERYKKKVKDLGLVNKATPEMAQHVKEGSINMEKQIEQLETSKRRLLGNGLDACSLHELQQIENQLERSLSKIRGRKSQLFKEQIDSLKEQEKCLLEENTKLKEEFRKAQLVQPLSDQQQTESQKEERIYVETELFIGPPEHRTSRKAQN* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00108 215 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte12g00108 215 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Pte12g00108 215 Coils Coil 121 141 - -
Pte12g00108 215 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Pte12g00108 215 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte12g00108 215 Coils Coil 143 170 - -
Pte12g00108 215 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte12g00108 215 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Pte12g00108 215 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte12g00108 215 Pfam K-box region 87 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte12g00108 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte12g00108 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte12g00108 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte12g00108 215 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 179 - -
Pte12g00108 215 Coils Coil 94 114 - -
Pte12g00108 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte12g00108 215 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00108 Pte-Chr12 909474 912504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00108 1 212 MADS-box Gene Family AT4G22950 58.605 7.73e-82 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte12g00108 K-box 6.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00108 - - gmx:100782713 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00108 12 909474 912504 Pte12g00108 12 909474 912504 RCT