Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00103 ATGGATGGAAGAGAAGCTACGACATTTGCTGGTGGTTCAGCTTCATACTACATACATAGAGGTGGACATGGTGGTTCTGGGTCTGGAACACCGTATCATGCACCGCCAGGGTTCAGGCAGGTGTCCAATGCTAGCATTCCTGATCAGTCACTCGTGCAGGGAGGCTCGGTGGGACAGTCATTCTCCGTAGATCATTCACATTCCAATTTTAATCATGGTGTCAGCATAAGTGTTCCTCTCGGAGCACCTTCTACTGAGCCTGTAAAAAAGAAACGAGGAAGGCCGCGTAAATATGGTCCTAATGGACCGATATCTTTGAGACTTTCGCCTATGTCTGGCACTGCTAATTCTACCCCAGGCTCAGACTCACTATCTCCAAAAAAGGGTAGAGGACGCCCTCCTGGAAGTGGAAGAAAGCAACAGTTAGCAAATATGGGTGAATGGATGAATAATTCAGCTGGAGTGGCTTTTGCTCCGCATGTGATCACAGTTGGAGTAGGCGAGGATGTTGTAGCAAAGATATTATCTTTTTCGCAACAGAGAACACGTGCACTTTGCATTTTGTCAGGCACTGGGGCAGCCTCTTCTGTTACACTGCGGCAGCCAGCTTCTATTGATGTTAGCGGCACCTATGAGGGCCGATTTCAAATATTATGCTTGTCTGGTTCTTACTTGGTTGCTGAGGAAGGTGGTCCTCGCAATAGAACAGGTGGAATGAGTGCTTCTCTCTCTAGTCCGGATGGTCAGGTTATTGGCGGTGCTATTGCAATGCTTATAGCTGCCAGTCCAGTGCAGGTTGTATTATGCAGTTTTGTGTATGGAAATGGAAGTTCCAAGACAAAGACCAATGAAATAACTTCTAAAAGAAATGAAGATTCCGAGAGTAGGGAAGATGATAGGTTAGCCACACCAGCTCCTGCTTCTCAAAGTTACACTCCCTCTGCTTCCGGTGGCTGGCCTGGACCAGTGGACCTGAAAAGTCCAAACACAGGGATTGACCTGACTCGTGGGTGA 1014 0.4763 MDGREATTFAGGSASYYIHRGGHGGSGSGTPYHAPPGFRQVSNASIPDQSLVQGGSVGQSFSVDHSHSNFNHGVSISVPLGAPSTEPVKKKRGRPRKYGPNGPISLRLSPMSGTANSTPGSDSLSPKKGRGRPPGSGRKQQLANMGEWMNNSAGVAFAPHVITVGVGEDVVAKILSFSQQRTRALCILSGTGAASSVTLRQPASIDVSGTYEGRFQILCLSGSYLVAEEGGPRNRTGGMSASLSSPDGQVIGGAIAMLIAASPVQVVLCSFVYGNGSSKTKTNEITSKRNEDSESREDDRLATPAPASQSYTPSASGGWPGPVDLKSPNTGIDLTRG* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00103 337 Gene3D - 159 292 - -
Pte12g00103 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 59 296 IPR039605 GO:0003680
Pte12g00103 337 MobiDBLite consensus disorder prediction 22 141 - -
Pte12g00103 337 MobiDBLite consensus disorder prediction 42 75 - -
Pte12g00103 337 Pfam Plants and Prokaryotes Conserved (PCC) domain 159 272 IPR005175 -
Pte12g00103 337 CDD DUF296 159 271 IPR005175 -
Pte12g00103 337 MobiDBLite consensus disorder prediction 279 337 - -
Pte12g00103 337 SUPERFAMILY AF0104/ALDC/Ptd012-like 157 273 - -
Pte12g00103 337 MobiDBLite consensus disorder prediction 284 301 - -
Pte12g00103 337 MobiDBLite consensus disorder prediction 107 124 - -
Pte12g00103 337 ProSiteProfiles PPC domain profile profile. 154 294 IPR005175 -
Pte12g00103 337 PRINTS AT-hook-like domain signature 125 136 IPR017956 GO:0003677
Pte12g00103 337 PRINTS AT-hook-like domain signature 89 99 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00103 Pte-Chr12 862391 866618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00103 1 338 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 49.219 1.01e-94 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00103 - - qsa:O6P43_034235 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00103 12 862391 866618 Pte12g00103 12 862391 866618 RCT