Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00090 ATGTACACTTCGATCATAGTTGAAAATCGACGAACTTTCTCAAAGGTTCTATGCAGTTTAGTCTTGACTCGATCCATGGGTGGGGGACCTCGGACATTTCCCGGCGGTGTTAACAAGTGGAAATGGAAGCGAATGCACGAGAAACGAGCGAGGGAGAAAGAGAATCGGCTTCTCCAACAGGAAAAGCAAATCTATGAGGCCCGAATCCGCTCTCAAATTCGTGCTAAACTCTCAGGCATACCTAACCCTTCTGCCAATACGAACCAACAACCAAGCTCTATTCACGGCGCTATGACTCCTCAAGACCATATCAAAGCATTAGCTAATCGTTTCATGAAAGCTGGAGCTGAAGATTTGTGGAATCATGACGACGGTCCGTTGAAGTCTCCACCTCCACCTCCGTCTCCGAAAATGAATGCTGCTAGTAGGACAGCTGTTGGATCAAATGGACGGCCAGGATCCATTGGGTCGCCATTGGATTTAAGGAAGCTGATATCAGACGGTCGTAATGTAGCATCCAATCGGGAAAATTTGAGCTTGAAAAATACCGCTAATTTTGTGAATACAAGGAATTTCTCGGCGCAAAGGCGAAAAGGATATCGGAGAAATGAGAGTTCTTCGAGTGAAAGTGATAATGACAATGATTCCAATGCCAATTATTCAAAATCCACGGTAAGTAGAGTATCTCAAAACGGAAAAAACATGAGCTTTAGAAATGTGAATGATCACGTGAAAAACAACCGAGTTTTGGGTCAAAGAAACCGAAAATACTTTAGAAGTGGCAGTTCTTCAGGTGAAAGCGAATTGGATTCTGATTCTGAAGTCTCTTCAAGGTGGTCCAGGTTGACGTTAGGCGGTAAGGAAGAAGAAGATTTGGACGCTGAAAACGGTCTAAGAAATGTGAGGAATTTCCGGGATATGGGTAGTAGTGCTTCATTAGGTAAGGTTGACGTGAAGACTAAAAGGAGGGCGATGCCAATGACTGCACTTGATGAAGAGAGATATCTCTCACAGCAGGTTGAATTGATTCGGCATGAACTTGGCAAGAGGAAAGCCGAAGCTGAAGACTTGAAAGCTCAAAATGAAACTTTTTTCACTCAGAAAAGATTTGATGAGTGTGATATATCTTCTTTAACAGTAAAGGCTCTCTCTTCTGCTCGATACATATACATGACTCGGGTGCAGGAGGCTACTCTTTCTGTGAGTCTTGAAGGAAAGGATGCTTTGGTGAAAGCTAGAACGGGCACTGGAAAAAGCCTAGCCTTTTTGCTTCCTGCTATTGAAACAGTTTTGAAGGCTACCCAAGAAAACACCAACCCACGCGTGCCTCCTATCTACGTTCTTATTATCTGCCCCACAAGAGAACTTGCGAGTCAAATTGCTGCAGAAGCAAAAGTGTTACTTCAGTACCATAATGGCATAGGTGTATTAACATTGGTTGGTGGTACACGTTTCAAAGTTGATCAAAAACGACTTGATTCAGATGCATGCCAGATATTAGTTGCTACCCCAGGACGACTCCTTGACCATATTGAGAATAAATCTGGAATATCTGTAAGGTTAATGGGATTGAAAATGCTTGTTCTCGACGAAGTTGACCGCTTACTCGATCTGGGGTTCCGGAAAGATATTGAAAGGATAGTTGATTGTTTGCCTCGTCAGAGGCAATCCTTACTTTTGTCTGCAACAATTCCAAAAGAGGTTACTGGTTCCCCAAAAAATCTAAATACAAAATATACAAAATATACTTCCTTCCTTACATCTCTTTCACACATTCCTTCTTTAATTAACATGCAGGTGCGCCGTGTCTCTCAACTTGTTTTAAAGAGAGAGCACACATTCGTTGATTCGGTGGGATTGGGTAGTGTGGAAACTCCTGCTGCTATAAAACAATCTTATCTTGTTGCTCCACATGAATTACATTTTAAATTAGTACACCATCTTTTGAAGGAGCATATCTTGCAATCACCTGATTACAAGGTTGTTGTATTTTGCACAACGGGGATGGTGACTTCACTCCTATATTTATTTCTCTGTGAAATGAAAATGAATGCCAGGGAGATACATTCTAGAAAGCCTCAGATTTCTCGAACTCGTGTATCTGATGAATTCAAGGAATCCAAACAAATTATTCTGGTTTCATCCGATGTTTCTGCTCGTGGAATGAATTATCCTGATGTTACATTGGTCATTCAGATGGGTATTCCTTCTGACCGGGAGCAATATATACATCGTCTTGGAAGAACTGGACGGGAAGGGAAAGATGGTCAAGGTATTTTGTTGATTGCACCATGGGAAGAGTATTTCCTGGATGAAATCAAGGACCTTCCTCTTCAGAAGTTCCCCTTACCGGATGTTGACCATACAAACCTCAAGATGGAGGAAGCGATGGCAAAGATTGATAACAATGTCAAGGAAGCAGCATATCATGCTTGGCTTGGATATTATAACTCTATCAGGGAAATTAGCAGAGAAAAGTCCACTCTGGCTGAGCTAGCAAGTAAATTCTCTCAATCAATTGGTTTGCAGAGACCTCCTGCTTTATTTAGGAAAACGGCATTGAAGATGGGTTTGAAGGACATTCCAGGCATCAGAATACGTCAATAA 2607 0.4196 MYTSIIVENRRTFSKVLCSLVLTRSMGGGPRTFPGGVNKWKWKRMHEKRAREKENRLLQQEKQIYEARIRSQIRAKLSGIPNPSANTNQQPSSIHGAMTPQDHIKALANRFMKAGAEDLWNHDDGPLKSPPPPPSPKMNAASRTAVGSNGRPGSIGSPLDLRKLISDGRNVASNRENLSLKNTANFVNTRNFSAQRRKGYRRNESSSSESDNDNDSNANYSKSTVSRVSQNGKNMSFRNVNDHVKNNRVLGQRNRKYFRSGSSSGESELDSDSEVSSRWSRLTLGGKEEEDLDAENGLRNVRNFRDMGSSASLGKVDVKTKRRAMPMTALDEERYLSQQVELIRHELGKRKAEAEDLKAQNETFFTQKRFDECDISSLTVKALSSARYIYMTRVQEATLSVSLEGKDALVKARTGTGKSLAFLLPAIETVLKATQENTNPRVPPIYVLIICPTRELASQIAAEAKVLLQYHNGIGVLTLVGGTRFKVDQKRLDSDACQILVATPGRLLDHIENKSGISVRLMGLKMLVLDEVDRLLDLGFRKDIERIVDCLPRQRQSLLLSATIPKEVTGSPKNLNTKYTKYTSFLTSLSHIPSLINMQVRRVSQLVLKREHTFVDSVGLGSVETPAAIKQSYLVAPHELHFKLVHHLLKEHILQSPDYKVVVFCTTGMVTSLLYLFLCEMKMNAREIHSRKPQISRTRVSDEFKESKQIILVSSDVSARGMNYPDVTLVIQMGIPSDREQYIHRLGRTGREGKDGQGILLIAPWEEYFLDEIKDLPLQKFPLPDVDHTNLKMEEAMAKIDNNVKEAAYHAWLGYYNSIREISREKSTLAELASKFSQSIGLQRPPALFRKTALKMGLKDIPGIRIRQ* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00090 868 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 444 770 IPR027417 -
Pte12g00090 868 Pfam Helicase conserved C-terminal domain 646 752 IPR001650 -
Pte12g00090 868 Coils Coil 43 70 - -
Pte12g00090 868 CDD SF2_C_DEAD 629 762 - -
Pte12g00090 868 MobiDBLite consensus disorder prediction 256 277 - -
Pte12g00090 868 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 399 582 IPR014001 -
Pte12g00090 868 MobiDBLite consensus disorder prediction 210 247 - -
Pte12g00090 868 MobiDBLite consensus disorder prediction 189 277 - -
Pte12g00090 868 PANTHER RNA HELICASE 349 797 - -
Pte12g00090 868 SMART ultradead3 387 592 IPR014001 -
Pte12g00090 868 Pfam DEAD/DEAH box helicase 392 568 IPR011545 GO:0003676|GO:0005524
Pte12g00090 868 MobiDBLite consensus disorder prediction 118 161 - -
Pte12g00090 868 Gene3D - 624 848 IPR027417 -
Pte12g00090 868 SMART helicmild6 672 753 IPR001650 -
Pte12g00090 868 Gene3D - 346 581 IPR027417 -
Pte12g00090 868 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 648 797 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00090 Pte-Chr12 794233 798817 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00090 394 778 Eukaryotic Initiation Factors Gene Family AT3G19760 26.650 1.89e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00090 - - qsa:O6P43_034216 1111.67