Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00087 ATGCCAGCATTAAGCTCAACGAGGTTGCTCTTGCTTGTTGGGCAGTCTTCTCCGTTGCCTAGGTTCTTGCCCAAGTCTAAAGTGGGTTGGTTATTTACAAGTTCTCCTTCTTTGAGCCATCTAAAGTGTGATCATGCTCTCCTCACGCTTTCTAGTCTTGGTTTCGTTGGTGAAACTGAGACAACTGATAAAAGTAAGTTAGATAAGCTTAAGCCAATGAGTTCGTCTGATCAATTGCCTCAAAACAAACTAAAAGCAGCGCCAAGCAATGAAATCAAGCCTCACGTGTTGAAACACTTGCGGGAACATGAGTTTGTTCCTTTTGCTGCAAACTCATTCTCTGAACTTGGCCTTCCAGCCTCATTGATTGAGAGATTGGAGAATGAAGGTTTCACTGTTCCGACGGAAGTTCAATCTGCAGCAATACCCACTTTGCTTAATGACCATGACGTTGTAATCCAGTCTTACACAGGATCAGGAAAAACATTGGCTTATCTCCTCCCTATACTCTCGAATGTAGGTCCTTTTAGCAAGAAATCTTCTCATGATGATGGTGACAGTGGCAGTGCAAAGAAAATTGGGATACAGGCAGTAATTGTTGCTCCTTCTAGGGAGCTGGGGATGCAAATTGTGAGGGAGTTTGAGAAGATATTAGGGCCCACATACAAGAGAGCAGTTCAGCAGCTTGTAGGAGGTGCAAACCGATCTAGACAGGAGGAAGCACTCAGGAAAAATAAACCAGTCATTGTCGTGGGAACACCTGGTCGAATTGCAGAGATAAGTGCTGCTGGAAAACTCCATACTCACGTGTGCCGCTACTTGGTTTTGGATGAGGTTGATGAACTATTGTCATTTACATTCCGAGAGGACATGCATCGCATATTAGAACATGTTGGAAGAAGATCAGGTGCTGACCCTCGTGGACTCTCAACCGCACTTGCTAGACGAACTGAACGTCGGCTTGTTATGGTGTCTGCAACAGTGCCATTCTCTGTTATCAGAGCAGCCAGTAGCTGGGGGCACGAACCGCTTCTTGCTCAAGCCAAGAAAGTGGTTGCACTCGAATCATTTTGCCCTCAAGAGCCTGTAAACTTGCCTGGTTCTGCATCCAACCTCAACTCAATGTCAAAACCAAACCCACAACCTGCAGCTGCATCGCAGAGTCTGCCCCCTCGACTGAAGCACTATTATTGTCTCTCAAAGATACAACACAAAGTTGATACGTTAAGAAGGTGTATTCATGCGCTGGATGCCAAATGTGTTATAGCTTTTATGAATCACACAAAGCAGTTGAAAGATACCGTCTTCAAGCTTGAAGCTCGTGGAATGAAAGCTGCAGAGTTACATGGCAATCTTGGGAAGCTCGCAAGATCGACCACCCTTAAGAAATTCAAGAATGGAGAGTTGAGGGTTTTGGTGACGAATGAATTGTCCGCAAGGGGTTTAGATGTTGCAGAATGTGATCTCGTGGTTAATCTGGAGTTACCCACAGACTCAACTCACTATGCCCATCGAGCAGGCAGAACAGGTCGGCTTGGTAGGAAGGGTACAGTGTTATCCATATGCGAGGAACCGGAGGTTTTTGTTGTCAAAAAGCTGCAGAAGCAGCTTTGTGTACCAATAGCTGCATGTGAATTCATGGACGGTAAGCTAGTTCCCGTTGAAGATAAAGCTCCACAAGTTCTTAAGAAATAA 1695 0.4519 MPALSSTRLLLLVGQSSPLPRFLPKSKVGWLFTSSPSLSHLKCDHALLTLSSLGFVGETETTDKSKLDKLKPMSSSDQLPQNKLKAAPSNEIKPHVLKHLREHEFVPFAANSFSELGLPASLIERLENEGFTVPTEVQSAAIPTLLNDHDVVIQSYTGSGKTLAYLLPILSNVGPFSKKSSHDDGDSGSAKKIGIQAVIVAPSRELGMQIVREFEKILGPTYKRAVQQLVGGANRSRQEEALRKNKPVIVVGTPGRIAEISAAGKLHTHVCRYLVLDEVDELLSFTFREDMHRILEHVGRRSGADPRGLSTALARRTERRLVMVSATVPFSVIRAASSWGHEPLLAQAKKVVALESFCPQEPVNLPGSASNLNSMSKPNPQPAAASQSLPPRLKHYYCLSKIQHKVDTLRRCIHALDAKCVIAFMNHTKQLKDTVFKLEARGMKAAELHGNLGKLARSTTLKKFKNGELRVLVTNELSARGLDVAECDLVVNLELPTDSTHYAHRAGRTGRLGRKGTVLSICEEPEVFVVKKLQKQLCVPIAACEFMDGKLVPVEDKAPQVLKK* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00087 564 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 74 551 - -
Pte12g00087 564 Pfam DEAD/DEAH box helicase 135 332 IPR011545 GO:0003676|GO:0005524
Pte12g00087 564 Gene3D - 390 547 IPR027417 -
Pte12g00087 564 Pfam Helicase conserved C-terminal domain 407 513 IPR001650 -
Pte12g00087 564 CDD DEADc 122 343 - -
Pte12g00087 564 SMART helicmild6 432 513 IPR001650 -
Pte12g00087 564 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 408 564 IPR001650 -
Pte12g00087 564 Gene3D - 63 347 IPR027417 -
Pte12g00087 564 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 111 139 IPR014014 GO:0003724
Pte12g00087 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 533 IPR027417 -
Pte12g00087 564 CDD SF2_C_DEAD 393 522 - -
Pte12g00087 564 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 346 IPR014001 -
Pte12g00087 564 MobiDBLite consensus disorder prediction 368 388 - -
Pte12g00087 564 SMART ultradead3 130 357 IPR014001 -
Pte12g00087 564 MobiDBLite consensus disorder prediction 368 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00087 Pte-Chr12 758759 761152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00087 112 541 Eukaryotic Initiation Factors Gene Family AT3G19760 24.480 4.16e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00087 - - cill:122280534 777.319