Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00076 ATGTCCAATCAGACAACTCCCATTACATTGGACCATGTAACTGCAGAGAAAACACAGCAGCAACCGCTTAGCACTCCTGCTCCCCTCGAATCACAGCCTTCACCAGTCCAATGTCAAGACCAAACCAGCGCGACTAATCCTGGAGACTCACCTCCAAAACAACTTGAATCTAGTAAAGTCATTTGTACCATGGCGTCTTCTTCCACCAGAAGGCACAACAAGTATCACGGAATCCGTTACAGGAGCGGGAAGTGGGTATCAGAGATAAGAGAGCCTCGCAAGACATCAAGAATATGGCTCGGCACTTTTCCAACTCCGGAAATGGCTGCTGCAGCCTATGACGTTGCAGCTCTCGCCCTGAAAGGCAATGACGCATCTCTCAACTTTCCGGACTCTATTGGGACATACCCTGTACCTAAATCAGCTTCTCCTAGTGACATACGCAATGCTGCCAAGGCTGCAGCTTCCATGTCCAAGAATGCAGATTCCAGTATTCGTAAATCCATACAGAAAAGCGATGATCATCACAGTGACATGAGTGGTGCGATGGTTTCAACATCAAGCGGAGAATTTGTGGATGAGGAAGCCATATTCAGCATGCCTAGTTTGCTGATGGATATGGCAGAGGGCATGTTGGTTTCTCCTCCAAGAATGAGCTCAGTGCAATCTGAGGATTCGCCTGATAATTCAGATAATGCAGGAGAAAATTTATGGAGCTATCCTTGA 726 0.4725 MSNQTTPITLDHVTAEKTQQQPLSTPAPLESQPSPVQCQDQTSATNPGDSPPKQLESSKVICTMASSSTRRHNKYHGIRYRSGKWVSEIREPRKTSRIWLGTFPTPEMAAAAYDVAALALKGNDASLNFPDSIGTYPVPKSASPSDIRNAAKAAASMSKNADSSIRKSIQKSDDHHSDMSGAMVSTSSGEFVDEEAIFSMPSLLMDMAEGMLVSPPRMSSVQSEDSPDNSDNAGENLWSYP* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00076 241 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Pte12g00076 241 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 44 240 IPR045277 GO:0003700
Pte12g00076 241 SUPERFAMILY DNA-binding domain 74 132 IPR016177 GO:0003677
Pte12g00076 241 FunFam Ethylene-responsive transcription factor 2 73 131 - -
Pte12g00076 241 CDD AP2 74 132 IPR001471 GO:0003700|GO:0006355
Pte12g00076 241 MobiDBLite consensus disorder prediction 216 241 - -
Pte12g00076 241 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700|GO:0006355
Pte12g00076 241 ProSiteProfiles AP2/ERF domain profile. 74 130 IPR001471 GO:0003700|GO:0006355
Pte12g00076 241 MobiDBLite consensus disorder prediction 152 186 - -
Pte12g00076 241 MobiDBLite consensus disorder prediction 214 241 - -
Pte12g00076 241 MobiDBLite consensus disorder prediction 1 57 - -
Pte12g00076 241 Pfam AP2 domain 74 122 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00076 Pte-Chr12 692158 692883 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00076 65 240 AP2-EREBP Transcription Factor Family AT5G52020 53.039 1.22e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte12g00076 AP2 1.4e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00076 - - sind:105164147 223.402