Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00075 ATGGAACTTGTCCGTCAAAAGCTCTCGAAGGAAAAAGCGGTTGGATCAAATTACAGAGGCGTTGTCAAGTCAGATGCATCATCCACGTCGTCTGAATATTCAAGCTCTTGGGGTTGCACTGCTCCACCAGTTATGAACTGCTCCGATGAAGAAGAGGTTTTATTGGCATCAAATGTACCCAAGAAACGAGCGGGACGAAAGGTGTTCAAGGAAACCAGACATCCAATCTACAGGGGAGTTCGACAGAGAAAAAATAACAGGTGGGTATGTGAACTGCGTATGCCTGATGATAAGAAGACCAGGTTATGGCTTGGTACGTACCCAACTGCTGAGATGGCTGCAAGGGCTCATGATGTTGCAGCCTTGGCACTTCGTGGCAAAGCTGCATGTGTCAACTTTGCAGACTCGGCATGGAGGCTGCGTTTGCCAGCTTCAAAGGATGCCCACGAAATAAGAAAAGCAGCGGCAGAAGCTGCAGAGGTATTTGGGGATTCCAAGTCGAAGGCGGAGAGATGGATGAAGACTCAATACAACGATGAAGTTTCCAGCGGTGAGAGAACAATGGAGGAAGCAGGAGCTTTGAGCTCTCGAGATGATTCGGCTTATCCCATAGAAAGGGGAACGGATCAGTTTGGCATGCATGGCTGGCCTCAAGATTTTTTGGATGGTCCTTTGCTTTCTCCTATTCATTGTGTTCATGAAAGTACGCAATGTTGGAACGATGTGGAAATGGATGCTAACGAGGTATCATTATGGAACTTCTCCACTTGA 771 0.4734 MELVRQKLSKEKAVGSNYRGVVKSDASSTSSEYSSSWGCTAPPVMNCSDEEEVLLASNVPKKRAGRKVFKETRHPIYRGVRQRKNNRWVCELRMPDDKKTRLWLGTYPTAEMAARAHDVAALALRGKAACVNFADSAWRLRLPASKDAHEIRKAAAEAAEVFGDSKSKAERWMKTQYNDEVSSGERTMEEAGALSSRDDSAYPIERGTDQFGMHGWPQDFLDGPLLSPIHCVHESTQCWNDVEMDANEVSLWNFST* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00075 256 Pfam AP2 domain 75 126 IPR001471 GO:0003700|GO:0006355
Pte12g00075 256 MobiDBLite consensus disorder prediction 179 201 - -
Pte12g00075 256 SUPERFAMILY DNA-binding domain 76 136 IPR016177 GO:0003677
Pte12g00075 256 CDD AP2 75 136 IPR001471 GO:0003700|GO:0006355
Pte12g00075 256 Gene3D AP2/ERF domain 76 135 IPR036955 GO:0003700|GO:0006355
Pte12g00075 256 ProSiteProfiles AP2/ERF domain profile. 76 134 IPR001471 GO:0003700|GO:0006355
Pte12g00075 256 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 27 253 IPR045277 GO:0003700
Pte12g00075 256 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Pte12g00075 256 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Pte12g00075 256 SMART rav1_2 76 140 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00075 Pte-Chr12 687263 688033 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00075 55 254 AP2-EREBP Transcription Factor Family AT5G51990 50.485 2.33e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pte12g00075 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00075 - - pvu:PHAVU_003G212800g 203.756