Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00068 ATGCAAGAACCAAGCTTGAGGACGATAGGTGGAGGAGGTGGAAGTTTATGCGGAGAACTCCAAGTATCCGGTGACCATAACCGACGGCTGAAGGCTGAGATAGCCACACACCCCTTGTACGAGCAGCTTCTGGCCGCCCATGTAGCCTGCCTCCGCGTTGCTACGCCGATCGATCAGTTGCCGCTGATAGACGCTCAGTTAATACAGTCACATCATCTTCTACGCTCTTATGCTTCTCACAGCAGCCATGCCCTTTCCCCTCGCGAGCGTCAAGAGCTTGACAACTTCTTGGCACAATACTTGATAGTTTTATGTAGTTTCAAAGAACAGCTTCAGCAACATGTCAGAGTTCATGCGGTTGAGGCAGTCATGGCCTGCCGTGATATCGAAAATACCTTACAAGCACTCACGGGAGTAAGTCTTGGAGAGGGCAACGGTGCAACAATGTCAGACGATGAAGATGAGATGCAGATGGATTTCTCTATTGATAATTCCGGAAATGATGGCCATGACATGATGGGATTGGGTCCACTACTGCCAACTGAATCTGAAAGGTCACTAATGGAAAGAGTTCGTCAGGAACTGAAGATAGAACTTAAGCAGGGCTTTAAGTCCAAAATTGAAGATGTTAGAGAAGAGATCTTGAGAAAAAGACGAGCTGGGAAATTACCTGGAGACACAACTACAGTGTTGAAAAATTGGTGGCAGCAACATTCCAAGTGGCCTTACCCCACTGAAGACGACAAGGCAAAACTAGTAGAGGAGACAGGCTTGCAACTGAAGCAAATTAATAATTGGTTCATCAATCAAAGAAAGCGCAACTGGCACAACAACTCTCAATCTGTGACCTCTTTTAAGTCCAAGCGCAAGAGGTAA 876 0.4669 MQEPSLRTIGGGGGSLCGELQVSGDHNRRLKAEIATHPLYEQLLAAHVACLRVATPIDQLPLIDAQLIQSHHLLRSYASHSSHALSPRERQELDNFLAQYLIVLCSFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGNGATMSDDEDEMQMDFSIDNSGNDGHDMMGLGPLLPTESERSLMERVRQELKIELKQGFKSKIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNNSQSVTSFKSKRKR* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00068 291 ProSiteProfiles ELK domain profile. 194 214 IPR005539 GO:0003677
Pte12g00068 291 SUPERFAMILY Homeodomain-like 216 282 IPR009057 -
Pte12g00068 291 ProSiteProfiles 'Homeobox' domain profile. 214 277 IPR001356 GO:0003677
Pte12g00068 291 SMART HOX_1 216 281 IPR001356 GO:0003677
Pte12g00068 291 SMART KNOX2_2 83 138 IPR005541 GO:0003677|GO:0005634
Pte12g00068 291 Pfam Homeobox KN domain 234 273 IPR008422 GO:0003677|GO:0006355
Pte12g00068 291 FunFam homeobox protein knotted-1-like 3 isoform X1 215 276 - -
Pte12g00068 291 Pfam KNOX1 domain 30 71 IPR005540 GO:0003677|GO:0005634
Pte12g00068 291 SMART KNOX1_2 28 72 IPR005540 GO:0003677|GO:0005634
Pte12g00068 291 Pfam KNOX2 domain 87 137 IPR005541 GO:0003677|GO:0005634
Pte12g00068 291 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 82 277 - -
Pte12g00068 291 CDD homeodomain 217 278 IPR001356 GO:0003677
Pte12g00068 291 Gene3D - 213 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00068 Pte-Chr12 622790 626094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00068 1 292 Homeobox Transcription Factor Family AT1G62990 78.644 2.59e-170 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pte12g00068 KNOX2 2.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00068 - - qsu:111989291 521.161