Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00059 ATGGCAGGATGGTCGGCTTTGACTAATGGGTCTCTGTATGACAAAGATTGCCTTGGCAACATCAGAGCTTGCCAGGGTAATGGGATTTGCACTATGTTGGATCATGCGGTTGCGGTGCAAGCTGATCTCGACGATTTCAATAACTGCAAAGTCAAACTGAAAGGCTTGTTTAATCAGATTATTTCAATTTACATCAAAGAAATTTCCTCTGGTGGCTTACTTCGACCGTTTCCAGTAATGCTTTGTGATGGACAGCCACTGGATTTGTTCGAATTGTTCTGGCTTGTCAAGGGTAGAGGCGGGTATCCTGTTGTGTCGAAGGAACGACTTTGGCCTCGTGTTTTGGAGGAATTGGAATTGGGTATTGAATTTATGGCATCGGTAAAATTAGTATTTTGCAAATATTTGAATGGTTTTGAAGGTTGGTTCAGGAAGAGATGTGCAGGTGACCACCACGTTTTCAAATCATTGCCTCTAGAGTTGCGGAGGACTTTTAGAGAGTTATTGTCAGTTGGGCCTAGTGGAAAATGGGAAAGATGCAAACTTTCTCGGTTTGAATCAACACAACATGAAGATTACATTGATGTGGGCAGACAGAAGAATCAACCAAATTTGGCAGATACCAAAAAGGAATATTTAGTATTTGAGGATGTTGTTCAAAAGATCAATGGCGTTACTGATAATGACGATAAAAGTTGTAGAAACAATGTAAACGATCTGGTCATGACGTTGAATTCACTAGTTGCTATCAAGCAATTAGATTCTCGTAAGAGGAAAAGAGAAGGTTTGTCGGGAATGCTGAATTGGTTAAGATTTATTGCTATGTCTCCACGAGATCCTTCCATCGGACCAATGCCTGAGCCATCTAAATCCAAGGATCGCACAGGCAAGGAGTTCTGGGTTCAGGCATTGAGAGCAAGGGAGGCACGTTTGCTGAAAAGGCATGTCGAGTCAAATTACGAAGCGTTGAATTTGGAGAGTCAGAGGCAGAGGCAAAAGGCGCATCCAGATATGTATGAGGATAAAATTATGATTTACCAGACGACAATGAAATTAAGATGCAGTGAGAGACTTCCTGCAGTAGCAAAATCTCGTAAATGCTCATGTTGTAATTTATGTTCAGCAACTCACAGAAAGTCAACCGGCTCCATCAAGAATGAAGCAGAACATGTCCCTAAGGAACAATCACTCATAACTGCTGAGCTACTGGATAAAGAAGCCGAGGCGGAACCATCTGAGGATGACCCTTCACATAAACAAGTTTCCATCGGTGCTCTCTTTCAAGCTGAAGTTCCAGAATGGACTGGTGTCCTAGATGAAAGTGACTCTAAGTGGCTAGGAGCACGAGTATGGCCTTTGAAATGTGAGAAGCAAAAAACCTTAATCGAGACAAGTCCCATTGGAAAAGGGATGGACGAGACATGCAACTGCCCACTTCAAGGCTCTGTTGAGTGTATTCGATTTCACATTTCTGAGCAGAGGATGAGACTGAAGCTTGAAGTGGGATTAGCCTTCTTCCATTGGGGACTTAACCATATGGGGGAAGAGGTTTCTCTTCAGTGGACACCTGAAGAAGAAAAGAGATTCAAAGTAATTTTAAGATCTGACAATATCTCCCATCATAAACATCTTTGGAATAACTCTTCTAGATATTTTCCGAAGAAGAGTAGAAGAGATTTGGTTAGCTATTATTTCAATGTATATCTGATACGTCGCAGAACTTATCAGAATCGCGTGACTCCATATGTTGTTGACAGTGATGATGATGAATCAGACTTTGGATCTATTTGTGATGGCTTTGGGGAAGAGGCGGTCCAGATTGAATCCAACAGTTTTATCGATTGCCCCCTCAACAAGCAGTGGACTGCTTCTTGTTAG 1878 0.4201 MAGWSALTNGSLYDKDCLGNIRACQGNGICTMLDHAVAVQADLDDFNNCKVKLKGLFNQIISIYIKEISSGGLLRPFPVMLCDGQPLDLFELFWLVKGRGGYPVVSKERLWPRVLEELELGIEFMASVKLVFCKYLNGFEGWFRKRCAGDHHVFKSLPLELRRTFRELLSVGPSGKWERCKLSRFESTQHEDYIDVGRQKNQPNLADTKKEYLVFEDVVQKINGVTDNDDKSCRNNVNDLVMTLNSLVAIKQLDSRKRKREGLSGMLNWLRFIAMSPRDPSIGPMPEPSKSKDRTGKEFWVQALRAREARLLKRHVESNYEALNLESQRQRQKAHPDMYEDKIMIYQTTMKLRCSERLPAVAKSRKCSCCNLCSATHRKSTGSIKNEAEHVPKEQSLITAELLDKEAEAEPSEDDPSHKQVSIGALFQAEVPEWTGVLDESDSKWLGARVWPLKCEKQKTLIETSPIGKGMDETCNCPLQGSVECIRFHISEQRMRLKLEVGLAFFHWGLNHMGEEVSLQWTPEEEKRFKVILRSDNISHHKHLWNNSSRYFPKKSRRDLVSYYFNVYLIRRRTYQNRVTPYVVDSDDDESDFGSICDGFGEEAVQIESNSFIDCPLNKQWTASC* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00059 625 SUPERFAMILY ARID-like 71 146 IPR036431 GO:0003677
Pte12g00059 625 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 44 620 - -
Pte12g00059 625 SMART bright_3 52 145 IPR001606 GO:0003677
Pte12g00059 625 ProSiteProfiles ARID domain profile. 51 144 IPR001606 GO:0003677
Pte12g00059 625 Coils Coil 313 333 - -
Pte12g00059 625 SMART ARID_2 55 140 - -
Pte12g00059 625 CDD ARID 75 140 - -
Pte12g00059 625 Pfam ARID/BRIGHT DNA binding domain 74 140 IPR001606 GO:0003677
Pte12g00059 625 Gene3D - 54 155 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00059 Pte-Chr12 560679 567089 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pte12g00059 ARID 1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00059 - - qsa:O6P43_034260 597.045