Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00058 ATGGGTGGTTGTTGTTGTTGTTGTTCTTCCAAAGCCACTGAACTGAATAGCGAACCAGCTTACTACTACTATCCAAGAGCGTCAGAGGAGCATGTTCCACTTTCTCCTCATAATGTTGCTACCTCTACTCTCTCAGGAGGCCTCCTTGTTGATACAAATCTGGACACTTCAATTCCAGATACCTATAGACCGCCGCCAGCACCTATTCCATATAATGTGGCCATAGGTGTTCCTCAAACTCCACCTGCGACTCAAGAAATTCGTGGGAACAAAATTGATGTGGTTCTGAATCCATCGAATTCTGGCCCAGTTCAGGTTGCAGTTTCTGGACATAATGATTTTACTTCGAAGTCCGAAGGCGTGAAGGAATCAGAGTGCAAACTGCATACTGGTTCAAAGCTCAACACTGCAAAGGAATCAGAAATCGAACTTTCAAAGTCTGTGGAACCAATTATGGAAGAGCAGGATGCATGTCCAATTTGTTTGGATGAGTATGACAAAGAGAATCCAAAGTTCACCCCAAAATGCGAGCATCATTTTCACCTAGCCTGCATTCTTGAATGGATGGAAAGAAGTGAAACATGTCCCGTCTGTGATAAGGTTTGCTTGATTTATTTTGTTTTCACTTTGCGTAAAGTATATTATTGCAATCTTGGGACTTAA 663 0.4238 MGGCCCCCSSKATELNSEPAYYYYPRASEEHVPLSPHNVATSTLSGGLLVDTNLDTSIPDTYRPPPAPIPYNVAIGVPQTPPATQEIRGNKIDVVLNPSNSGPVQVAVSGHNDFTSKSEGVKESECKLHTGSKLNTAKESEIELSKSVEPIMEEQDACPICLDEYDKENPKFTPKCEHHFHLACILEWMERSETCPVCDKVCLIYFVFTLRKVYYCNLGT* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00058 220 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 38 202 - -
Pte12g00058 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 203 IPR013083 -
Pte12g00058 220 ProSiteProfiles Zinc finger RING-type profile. 158 199 IPR001841 -
Pte12g00058 220 CDD RING-H2_AIRP1-like 154 201 - -
Pte12g00058 220 SMART ring_2 158 198 IPR001841 -
Pte12g00058 220 SUPERFAMILY RING/U-box 149 205 - -
Pte12g00058 220 Pfam Ring finger domain 157 198 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00058 Pte-Chr12 551590 555423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00058 1 200 C3H Transcription Factor Family AT5G41350 52.217 1.22e-67 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00058 - - qsu:111986066 286.189