Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00055 ATGGGTTTTCCGGTAGGCTGCACGGAGGTAATTCTCCCAAAGCTCTGCGTCCATGCTCTTTGGGTTCTGGGTTTCATCAGAAAATTGATCTCTGTCTTCTTTCGTTATCTGGGTTTCCAAGATTTTATAGAACCAGACGTTGTATGGTCGGATCAACAGACCCGAATGCCCGAATTCCGGTCCGTTTCCGCCCTCCTGATCTGCGAACTCCTGTCCGTCGTGAAATTTTCTGAGCTAGTGGACCCACCTGAGAGCTGTGCCGTTTGCCTCTACGAATTTGAAGCTGATGACGAGATAAGACAGCTGACGAACTGCCGTCATATCTTCCATCGGCACTGCCTGGACCGTTGGATGGGTTACGATCAAAGAACGTGTCCTCTTTGCAGGACCTCATTCATACCTGAAGATATGCAAGGAAATTTCAACGAGAGGCTCTGGGAAGCCTCTGGTATCCCTGACCTTTATGCAGAATTTTCTCACATCACAAATGGCTTTTAG 498 0.4839 MGFPVGCTEVILPKLCVHALWVLGFIRKLISVFFRYLGFQDFIEPDVVWSDQQTRMPEFRSVSALLICELLSVVKFSELVDPPESCAVCLYEFEADDEIRQLTNCRHIFHRHCLDRWMGYDQRTCPLCRTSFIPEDMQGNFNERLWEASGIPDLYAEFSHITNGF* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00055 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 132 IPR013083 -
Pte12g00055 165 ProSiteProfiles Zinc finger RING-type profile. 86 129 IPR001841 -
Pte12g00055 165 SMART ring_2 86 128 IPR001841 -
Pte12g00055 165 CDD RING-H2_RHA1-like 86 132 - -
Pte12g00055 165 SUPERFAMILY RING/U-box 68 135 - -
Pte12g00055 165 PANTHER RING ZINC FINGER PROTEIN-RELATED 24 141 - -
Pte12g00055 165 Pfam Ring finger domain 85 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00055 Pte-Chr12 532519 534662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00055 1 150 C3H Transcription Factor Family AT1G63840 56.774 2.15e-55 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00055 K16281 - zju:107430201 267.314