Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00054 ATGGCGGATAGAGAGCTCTGCAAAACAAAATCATCAACCGGTTTGTGTTACTCGGAAATATCATCCGGTAGTCCTACAATTCATCAGAGCCACCAAGGCCTGGTAAACCCGATCCAAGGCTATGTGTCCAATCCAGAAATGGTTAACCAGCACACTGGCAGGGGGTTGATAGGGTTCTCAATGAACCTGCAGCAACTAGGAACAGACGGCAACTCAATGGTATGGAAGAGCTTCTTTGCCAAACCAGGAAACCAACCTGAGTCTTCTACATCCAAATTGATGAATGAGTCTACGGCGGATTTTTTCCAACATGATCATTTCAACAAAGCTGATCAGTTCACATTAGCTGGAATTTCTGGAGCTAACACCGAGAACCTAATAGTTGGACCTGATCATGACTCTGCCACTTGGCAAGAGAATAGGTTATATGTCGACGATTCTTCTATAAGGTGCCTGCTTCCTTGCGAAGGAAATGAAAGGCGAAGTCAAGGTCTTTCTCTCTCTCTTAGCTCAAGCAACCCTTCAGGTGTTGGTTTAGAATCTTTTGAGCTTAGACACACAAATCATCATCAATCCCAACACGATATTGCTTCATCAAGTTGTAGAGATCATGAGGACGTTTTTGGGAATGCTCAACAGCAGCATTTGTTAATGCAGAACGGGTTTGTGGGGAAATCAGATGGAAATCATTATCAAGGGCCTTTCCTCCTTAAGAACTCAAAGTACTTGGTCCCAGCTCAGGAACTACTGAATGAGTTTTGTTATCTTGGAACTAATCAAACGGACCCGCAAAAGCAGAAGGCCCACAAGAAGAAGCTGTTGGAAGAGCAAGATGCCAGTGCTGGGACAAGAAAGCAATCTGTTAATTCCCTCGACTTCGTGGAGTTGCAGCGTAGAAAAACAAAACTACTTTCAATGCTTGAAGAGGTGGATAGGAGATACAGGTATTACTGTAATCAAATGAAGGCAGTGGTTTCATCTTTCGAATCAGTAGCAGGAACCGGGGCTGCTTCAGTGTATTCTGCGCTTGCCTCTAAGGCCATGTCAAGGCATTTCAGGTGTTTGAAAGATGGCATTTTGAGTCAGATCAAGGCCACAAGGAAAGCCATGGGAGAGAAAGACCCCATTGCACCCGGCACAACAAAAGGCGAGACACCTAGGCTTAGAGTTATTGATCAAAAACTTAGACAACAAAGAGCTTTCCAACAAATGAGCATGATGGAAAGCCATCCCTGGAGACCCCAACGTGGCCTTCCTGAGCGTTCCGTTTCGGTTCTCCGAGCTTGGCTCTTTGAGCATTTTCTACACCCGTATCCAAGCGACGTGGACAAACACATCTTAGCCCGCCAAACCGGTCTTTCAAGAAGCCAGGTATCGAATTGGTTCATTAATGCGAGGGTGCGGCTTTGGAAACCGATGGTTGAAGACATGTACTTAGAAGAAACAAAGGAGAAAGACGACAACATGGCCTCCTCAGATGGATTGAGTACTGATGTTGAAGACAATTGCCGGCCAATCCAAGCCCCATCACCCACACGACTGGACGATCAGAAAGCGCCACCAGATCCGCTGGTTCGAGTCGACTCGGACTGCCTCTCCTCAATCATCATCAACCCGGATAACAATAATGATCCTAGATCCTCCAGTAAAATCGTCCACGTACCTCACATGGATCCCACTTCTCACCAAGTTCAGCTGGGACGGGTTGGAGACTTTGGGTCGATGGAGCCAGATTTCACTTCTTACAATCAGCATTCTGGGAGCATGGTTGCATTTGGTAGTGAAAATATGAACTACAGTTTCAATGGTGGCGGCGTGTCATTAACTTTAGGGTTACAACAGCATGGGGGAAGTGGGGTGAGCTTAGCATTCCCTGCAGCTTCTCAGAATTCTTTGTTCTATCCGAGAGAGCACATGGAAGACTGCCATCCTGTTCAGTACTCTCTTCTTGATGCTGAAACTCAAAATCTACCGTACAGAAATTTGATGGGGGAACAGTTGCTCCACGATTTGGCTGGGTAG 2022 0.4619 MADRELCKTKSSTGLCYSEISSGSPTIHQSHQGLVNPIQGYVSNPEMVNQHTGRGLIGFSMNLQQLGTDGNSMVWKSFFAKPGNQPESSTSKLMNESTADFFQHDHFNKADQFTLAGISGANTENLIVGPDHDSATWQENRLYVDDSSIRCLLPCEGNERRSQGLSLSLSSSNPSGVGLESFELRHTNHHQSQHDIASSSCRDHEDVFGNAQQQHLLMQNGFVGKSDGNHYQGPFLLKNSKYLVPAQELLNEFCYLGTNQTDPQKQKAHKKKLLEEQDASAGTRKQSVNSLDFVELQRRKTKLLSMLEEVDRRYRYYCNQMKAVVSSFESVAGTGAASVYSALASKAMSRHFRCLKDGILSQIKATRKAMGEKDPIAPGTTKGETPRLRVIDQKLRQQRAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEDMYLEETKEKDDNMASSDGLSTDVEDNCRPIQAPSPTRLDDQKAPPDPLVRVDSDCLSSIIINPDNNNDPRSSSKIVHVPHMDPTSHQVQLGRVGDFGSMEPDFTSYNQHSGSMVAFGSENMNYSFNGGGVSLTLGLQQHGGSGVSLAFPAASQNSLFYPREHMEDCHPVQYSLLDAETQNLPYRNLMGEQLLHDLAG* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00054 673 Pfam Associated with HOX 237 359 IPR006563 -
Pte12g00054 673 SUPERFAMILY Homeodomain-like 413 478 IPR009057 -
Pte12g00054 673 FunFam BEL1-like homeodomain protein 4 415 477 - -
Pte12g00054 673 ProSiteProfiles 'Homeobox' domain profile. 409 472 IPR001356 GO:0003677
Pte12g00054 673 SMART HOX_1 412 476 IPR001356 GO:0003677
Pte12g00054 673 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 154 491 - -
Pte12g00054 673 Gene3D - 415 477 - -
Pte12g00054 673 MobiDBLite consensus disorder prediction 482 521 - -
Pte12g00054 673 SMART prehox3 231 361 IPR006563 -
Pte12g00054 673 Pfam Homeobox KN domain 429 468 IPR008422 GO:0003677|GO:0006355
Pte12g00054 673 CDD homeodomain 412 473 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00054 Pte-Chr12 523502 526832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00054 139 672 Homeobox Transcription Factor Family AT5G41410 44.237 3.30e-132 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pte12g00054 POX 2.7e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00054 - - tcc:18606572 848.966