Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00029 ATGCTCAACAATATGTCACCTCTAGTCAAGTACACCCAGCACTTGAACCGCACGAAGCTCCTGCGACAAGATTTTACAACAGGAGAAATGAAGCATCCTAAACTTGTCCGAGTGTTTGTTACAGACAAGGACGCCACTGACTCATCCAGTGACGAAGAATGCGAGTTCCTCCCTCGCCAACGAGTCAGAAGGTTTGTGAATGAGATTAGAATCAAGGCATGTTGCAACCCACATCTAAACGAGAGCCTCTCACGAAGAAAGGTTGTGAAGTCTAGTAATGACGGTAATAAGGTGAAGTCCGTCCGTTGCAAAGGCCGTGTGCCGGCAAATAACCGGCCAATGAAGTCGCCGCCAGGGAAGAAGTTCCGGGGTGTGAGGCAGAGGCCCTGGGGTAAATGGGCGGCCGAGATCAGAGATCCCCTGCGACGCGTACGGTTGTGGTTGGGTACTTACGATACGGCGGAAGAAGCAGCCATGGCGTACGATAACGCGACTATTCAGCTGCGTGGACCAAACGCGCTCACCAACTTCGTCACACCGCCAGTTAAGAATGCTGCTGACATTCAAGTGAAATCGAGAGTTACAAACTCGAGTGAGGAAAAGTATCAAAACAACGTTGTTTGCTCCCCAACTTCTGTACTACGGTGCCCTTCTCCATTGAAGGAGGAAACTGAGTTGCACGTCCCAGTGGTTGCGAGGGAAATGGTTGATACTCACGGCACACAAGTTATTCAAGAAGAATCGTTGGCATTCGCTTCAGAAAACTCTTGGGAGTCGTTTATTTCAAAGGACATATTTGATTTTCAAGGTTCCTTGCCTGGTCCGAGTCCTAATCCTACATCATTATTTGAAGAGGACATAAGCTTGCGTTTTGATTTTGGATGGAGTTTAGCTGCAGACGACATGGTCGGAGGTGATCGTTTGGTTCACTTGAGTGATCATTTGTTATTGGGTTTTGGTTTCTCAACATGGCATAGAGACGACTATTTCCAAGACATCGGCGATTTGTTCGTTTCTGATACCGTGTTGGCCGTTTGA 1038 0.4798 MLNNMSPLVKYTQHLNRTKLLRQDFTTGEMKHPKLVRVFVTDKDATDSSSDEECEFLPRQRVRRFVNEIRIKACCNPHLNESLSRRKVVKSSNDGNKVKSVRCKGRVPANNRPMKSPPGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMAYDNATIQLRGPNALTNFVTPPVKNAADIQVKSRVTNSSEEKYQNNVVCSPTSVLRCPSPLKEETELHVPVVAREMVDTHGTQVIQEESLAFASENSWESFISKDIFDFQGSLPGPSPNPTSLFEEDISLRFDFGWSLAADDMVGGDRLVHLSDHLLLGFGFSTWHRDDYFQDIGDLFVSDTVLAV* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00029 345 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
Pte12g00029 345 Gene3D AP2/ERF domain 120 179 IPR036955 GO:0003700|GO:0006355
Pte12g00029 345 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Pte12g00029 345 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Pte12g00029 345 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
Pte12g00029 345 FunFam Ethylene-responsive transcription factor 2 120 179 - -
Pte12g00029 345 CDD AP2 120 177 IPR001471 GO:0003700|GO:0006355
Pte12g00029 345 SUPERFAMILY DNA-binding domain 121 178 IPR016177 GO:0003677
Pte12g00029 345 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 241 - -
Pte12g00029 345 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00029 Pte-Chr12 342228 344483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00029 7 346 AP2-EREBP Transcription Factor Family AT4G23750 37.534 1.50e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte12g00029 AP2 4.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00029 - - qsa:O6P43_034311 332.413