Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00018 ATGGATGTTGTTATTGACAGAGGAATTCTTGACTGCTGTCAGCATTGGTACTGTTTCACATGTATTGATAATTGGGCTTCCATCACAAATCTATGCCCACTTTGCCAGAATGAATTTCAATTGATCACATCTATTCCAGTCTATGATACCATCGGGAGCAACAGAGTTGAAGATGAGAATCTTTCAAGGGAGAATGTCTGGTGCATTGAAGGGAAAAATGACACATCTTTCCCATCATACTACATTAACGAAAATGCAGTTATTTGCTTGGATGGTGGTGGCTGCAAAATACGGAATGGGTCAGCAAGCATAGAAGATCCTGGACTTGATACATCGATTGCCTGTGATTCATGTGATATATGGTACCATGCTTTTTGCGTGGCATTTGGTCCGGAAGGCACATCTGAAAATACGTGGTTATGCCCTAGATGTGTCGTTCATGAAGTTCCAGTAGATACAAAAATGGACAAAATGCATGGTGCAGTCATACACTGTGGGCCAGGGCATGCTGACAATGCATGTCAGTTTGATGACTCCTTCAGGAAAATATCTGTTTCTGTTGCTGATTCTGGAGAGACAGCTCTTGTTATCTCAATGCACGGAGCACTTGATGGACCTAAAATGTCAAGTGAGAATGTTCTGCCATCCCCTCAAATTGACAATGATCATATGACTGAATCACTACTTCCCATACCTAATGGAAAGAGCAAAGACGCAGGGTTGTCACCCATGACTGTATCTCCTGATATAGAGGAACATGAACTATCCTTGTTGCAGAAATCTTCTGTCTTACATTCTGATTGGTTAGCGCATAGCAAGTCAAATCCAACTGGTCTTGAAGCAAACAATTCAAGTGGGTTTAATGGAGTCCTAAATGCCTCTGCAAAATTCAGTAGTGAATCTAAACAAATGCCTGGCCACTCTGAAAGTGAACTCAATTTTCGTCTTGGTTTAACAGTTGCTTCCATTCGCTCTGATGACTGTATGAACAAGGGCGCTGAAGATTGTGACACAGTTGTGCAGCAGGGAAATCCTTCAGAAGAATTATCAAGAGGAAATGAAAATGTTCTGAATGTTGAGAAGAATGCTGAAGTGATAGGTGAGAAGAGAAAGCATGCTTCTAGTAATCAAGTTTGTCTAAACAATGGAGAGCTGCAATGGGTGGACACATCTCAACCTGTAAATAAGCTCTCCACTTCGGCCTCGAAGTCAAAGAAGTTAATGTTAGGAAAAGGAAAAGTACGCGAGAACCTAACAAAGAAGATTTACGGTAACTCAAATGGAAGAAGAAAGCGTGCCTGGGATAGGGATTGTGAAGTTGAGTTCTGGAAGTACCGCTGCATACGAGCTTCCAAGCCTGAGAAGATTGAGACATTGAATTCAGTTCTGTACCTCCTGCGTAAGAGTTCAGAGAGCTTAGAATTAAAACACGAGTCTGAATGTGAAGCCACATATCCAATTCTGAACCGTCTATATCAAGCAGACACATCTGTTTTCCCTAGAAAAAATACAGCAGTTGCAACTAATGGAGGATCAGTTTCTTGGACATCTGGTGGTAAAGACGAGTCAGGTGTTCTGTCTGTGGACATAAAGAGTGACAAAAGGAAGTGGGCCTTACAAGTTCTTGCTAGGCGAGCAGCCATTGCTGGTGGGAAGAGAGGCGAGGAGAATCAGCAAGATAACACATTGTTCAAAGAAAACTATCCACTACTGGCTCAACTACCAGCAGACATGAGACCCATTTTGGCTACCACCAGCCACAATAAAATACCTGTATCAGTGAGGCAGACACAGCTCTACCGCCTGACTGAGCATTTCTTAAGGAATGCTAATCTGCGAGAGATCCGCAGAACTGCAGAAACAGAGTTAGCAGTTGCAGATGCAATTAACATTGAAAAGAATGCTGCTGACAGATCAAATAGCAAGCTGGTGTACATAAATCTATGTGCCCAAGAGCTATCACATCGTTGGAGTAAAAGCAACTTGGATCAAGCCACAGACATGAATCCATCCTCCTTGGAAAGTCTGAGTGAAAGACCGGAAAAACACATCCATGAAGTTCCACTTAATCCTGCGGTGGAAGAAGCACTTAAAACTGCCGGTCTTCTTTCTGATTCTCCTCCTGCAAGTCCTATTACAAAAAGTGAAACCGACAACGATGCAACTTATCCGTCTGGATCTGGAAATCTGGTGGAAATGGATTCTCATCCCGAACTAGAAATATATGGTGATTTTGAGTATGAACTGGAGGATGAAGATTACATTGGTGCTAGCAAAGCAGTCTTAAACCAACAGCCAGAAAGTGTTCCGAAAATTAAAGTACTTTTCTCTACTATGAATGTGAACAAGCCCTGCTGTACATGCTATGGAGTCTGA 2376 0.423 MDVVIDRGILDCCQHWYCFTCIDNWASITNLCPLCQNEFQLITSIPVYDTIGSNRVEDENLSRENVWCIEGKNDTSFPSYYINENAVICLDGGGCKIRNGSASIEDPGLDTSIACDSCDIWYHAFCVAFGPEGTSENTWLCPRCVVHEVPVDTKMDKMHGAVIHCGPGHADNACQFDDSFRKISVSVADSGETALVISMHGALDGPKMSSENVLPSPQIDNDHMTESLLPIPNGKSKDAGLSPMTVSPDIEEHELSLLQKSSVLHSDWLAHSKSNPTGLEANNSSGFNGVLNASAKFSSESKQMPGHSESELNFRLGLTVASIRSDDCMNKGAEDCDTVVQQGNPSEELSRGNENVLNVEKNAEVIGEKRKHASSNQVCLNNGELQWVDTSQPVNKLSTSASKSKKLMLGKGKVRENLTKKIYGNSNGRRKRAWDRDCEVEFWKYRCIRASKPEKIETLNSVLYLLRKSSESLELKHESECEATYPILNRLYQADTSVFPRKNTAVATNGGSVSWTSGGKDESGVLSVDIKSDKRKWALQVLARRAAIAGGKRGEENQQDNTLFKENYPLLAQLPADMRPILATTSHNKIPVSVRQTQLYRLTEHFLRNANLREIRRTAETELAVADAINIEKNAADRSNSKLVYINLCAQELSHRWSKSNLDQATDMNPSSLESLSERPEKHIHEVPLNPAVEEALKTAGLLSDSPPASPITKSETDNDATYPSGSGNLVEMDSHPELEIYGDFEYELEDEDYIGASKAVLNQQPESVPKIKVLFSTMNVNKPCCTCYGV* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00018 791 MobiDBLite consensus disorder prediction 706 729 - -
Pte12g00018 791 SMART PHD_3 94 145 IPR001965 -
Pte12g00018 791 Pfam PHD-finger 110 145 IPR019787 -
Pte12g00018 791 ProSitePatterns Zinc finger RING-type signature. 13 22 IPR017907 -
Pte12g00018 791 ProSiteProfiles Zinc finger RING-type profile. 13 36 IPR001841 -
Pte12g00018 791 PANTHER RING FINGER PROTEIN 41, 151 77 665 - -
Pte12g00018 791 MobiDBLite consensus disorder prediction 702 732 - -
Pte12g00018 791 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 63 IPR013083 -
Pte12g00018 791 ProSiteProfiles Zinc finger PHD-type profile. 29 147 IPR019787 -
Pte12g00018 791 SUPERFAMILY FYVE/PHD zinc finger 110 150 IPR011011 -
Pte12g00018 791 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 145 IPR013083 -
Pte12g00018 791 SUPERFAMILY RING/U-box 9 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00018 Pte-Chr12 273740 283858 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte12g00018 PHD 1.3e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00018 - - thj:104807002 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00018 12 273740 283858 Pte12g00018 12 273740 283858 RCT