Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00015 ATGGGTGCAGTTGCTGAAACCTCAACCTCTTCTTCCCACCTCAATTCGCAATCGCAGGCTCTTCAACTGAAATTATACCAAGCTTTCATTTTCTCAATCCCAATCCTATTCTCCATCATTCTCTTCCTCTTATTTTACTTGTTCTACCTCAAGAGAAGGACTTCCTCCCTCTCGTTTACTCAACCCTCGCAGTTGCTTCCAAGGACTTCCAACCTAGCTTCAACCACTCCATATCTTTCTTCGCTCTCTCTCTCGGATCTGAAACTGGAATTCGTGGACAAACTCCCAAAAATATTATTTGATGAGGAACTGTGGGCGAGGGATCCACAATGTTGCGTTTGTTTGGGAGAATTTGAGGTTGAAGAGGAATTACTGCAAATTCCTTATTGCAAGCATGTGTTCCATGGGGAATGCATTCATTATTGGCTGCAGTCAAACTGGACTTGTCCCTTATGCAGGTGTTCTGTCATCCCGACCAAATTTCACAATGGCAATATTGATAACGCAGCTGCTGGACCAACACCACCGCCACTTCCACCTACCTCTACTTTAATGGAGTTGGAGCTCATCGGACAAGAAGAGCTAGTTGTCGCGCAACATAACCCTCCTTTGCCAATTAACAATTCTATTCGTTTGTAA 639 0.4413 MGAVAETSTSSSHLNSQSQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRTSSLSFTQPSQLLPRTSNLASTTPYLSSLSLSDLKLEFVDKLPKILFDEELWARDPQCCVCLGEFEVEEELLQIPYCKHVFHGECIHYWLQSNWTCPLCRCSVIPTKFHNGNIDNAAAGPTPPPLPPTSTLMELELIGQEELVVAQHNPPLPINNSIRL* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00015 212 CDD RING-H2_EL5-like 110 153 - -
Pte12g00015 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 158 IPR013083 -
Pte12g00015 212 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Pte12g00015 212 SMART ring_2 111 152 IPR001841 -
Pte12g00015 212 Pfam Ring finger domain 110 153 IPR001841 -
Pte12g00015 212 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 19 163 - -
Pte12g00015 212 SUPERFAMILY RING/U-box 91 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00015 Pte-Chr12 264695 266291 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00015 15 158 C3H Transcription Factor Family AT4G10150 42.361 1.72e-35 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00015 K19039 - gmx:100794298 176.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00015 12 264695 266291 Pte12g00015 12 264695 266291 RCT