Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00008 ATGACGGAGGTGGCGAGCACTGTAGTGCTCGACGTTTTGGGGAGAAAAGTGTTGGATTTGGATCAGCCAATCGTCGACTACATCGTCAACGTCCTCTCTGACGAGGACTTCGATTTTGGTGATGACGGCGAAGGCATCTTTGAAGCTCTCGGAGAGCTCTTGGTCGGTGCCGGCTGTGTCCAAGACTTCTCTGAGTGTCGCACGGTTTGCGGCAAAATTTGTGAGAGATTTGGGAAGCACGGGTTGGTGAAAGTTAAACCAGCAGTTAGAAGCCTTGCTGCACCCTTTAGAATGAATGACGGAATGGATGATGAGGAAGTTCCAAAGAAGAAACCAGAGGTTCTGGATGGTCCCATATTATCTGAACGGGACCGAGCAAAGCTGGAAAGGAAGAAGAGGAAGGAAGAACGCCAGAGAGAAGCACAGTATCAGACCCATCTAGCTGAAATGGAAGCTGCTCGTGCAGGGATGCCGCGTATTATTGTAAATCATGATAACAGCGGGCCAGCTGTGAAGGATATTCACATGGAGAACTTCAATATTTCTGTCGGTGGCCGTGATCTCATTGTAGATGGATCTATTACACTTTCATTTGGAAGGCATTATGGTCTTGTCGGCAGAAATGGGACAGGAAAAACAACTTTTTTAAGGTACATGGCTATGCATGCTATTGATGGTATTCCCAAGAACTGCCAGATATTGCATGTTGAACAAGAGGTGGTTGGAGATGATACAACAGCTTTGCAATGTGTGCTTAATTCTGATATTGAGCGAACTCAGCTCCTGGAAGAAGAAGCTCGTTTACTTGCTCAACAGAGAGAATTAGTGTCCGAGGATACTGATGGAATGAGCGAAGGTAAAATTATTGGAGCAGTTGACAAAGATGCTGTTGGAAAAAGGCTTCAAGAAATATACCAAAGACTTGAGTTCATTGATGCGTACTCTGCTGAAGCACGAGCAGCTTCCATACTTGCTGGCCTCAGTTTCTCTCCTGAGATGCAAAAGAAGGCAACCAAAACTTTTTCTGGGGGATGGAGGATGCGTATAGCTCTTGCTCGGGCATTATTTATACAACCTGATATGTTACTGCTAGATGAGCCTACGAACCATCTCGATCTTCATGCTGTGCTTTGGCTGGAATGTTACTTGGTTAAATGGCCGAAAACATTTATCGTTGTTTCTCATGCAAGAGAGTTTTTAAACACGGTTGTCACTGATATTCTTCACCTACATAATCAAAAGCTGACTGCTTACAGAGGGGATTATGATATATTTGAGAGGACCCGAGAAGAACAGCTTAAAAACCAAGTGAAAGCATTTGAGGCGAATGAACGTGCAAGAGCTCATATGCAGTCCTTTATCGACAAGTTCCGTTACAATGCTAAAAGGGCATCCCTTGTTCAGTCCAGAATCAAGGCTTTGGACCGCATGGGCCATGTCGATGAAGTTGTTAATGATCCGGACTATAAATTCGAGTTTCCAACTCCTGATGATAGACCCGGGGCCCCAATAATTAGTTTTAGTGATGCATCTTTTGGCTATCCTGGTGGCCCCACCCTGTTTAAGAACTTGAATTTTGGAATAGATCTAGACAGTCGAATTGCAATGGTTGGGCCAAATGGTATTGGAAAGTCAACCATTCTGAAACTAATTGCTGGGGAACTACAACCCAGCTCAGGCACAGTTTTTCGTTCTGCTAAGGTCAGAATTGCTGTTTTCAGCCAGCATCATGTTGATGGGCTAGACCTCTCCTCAAATCCACTTTTATACATGATGCGATGTTATCCTGGAGTACCGGAACAAAAGCTCCGAGCTCACCTAGGGTCTTTGGGTGTAACTGGAAATCTTGCGCTTCAACCAATGTATACCTTGTCCGGTGGACAAAAGAGCAGAGTTGCATTTGCTAAGATAACTTTCAAGAAACCACACATACTGTTGCTTGACGAGCCATCCAACCACCTGGATTTGGATGCTGTTGAAGCACTCATTCAAGGACTTGTCTTGTTCCAAGGAGGGATTCTGATGGTAAGTCACGATGAGCATCTTATATCTGGAAGTGTAGAGGAACTGTGGGTTGTATCGGAAGGGAAAGTGGCACCTTTCCATGGCACATTCCACGATTACAAGAAGATACTCCAGTCATCTTAG 2148 0.4479 MTEVASTVVLDVLGRKVLDLDQPIVDYIVNVLSDEDFDFGDDGEGIFEALGELLVGAGCVQDFSECRTVCGKICERFGKHGLVKVKPAVRSLAAPFRMNDGMDDEEVPKKKPEVLDGPILSERDRAKLERKKRKEERQREAQYQTHLAEMEAARAGMPRIIVNHDNSGPAVKDIHMENFNISVGGRDLIVDGSITLSFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNSDIERTQLLEEEARLLAQQRELVSEDTDGMSEGKIIGAVDKDAVGKRLQEIYQRLEFIDAYSAEARAASILAGLSFSPEMQKKATKTFSGGWRMRIALARALFIQPDMLLLDEPTNHLDLHAVLWLECYLVKWPKTFIVVSHAREFLNTVVTDILHLHNQKLTAYRGDYDIFERTREEQLKNQVKAFEANERARAHMQSFIDKFRYNAKRASLVQSRIKALDRMGHVDEVVNDPDYKFEFPTPDDRPGAPIISFSDASFGYPGGPTLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSLGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKVAPFHGTFHDYKKILQSS* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00008 715 Pfam ABC transporter 408 488 IPR032781 -
Pte12g00008 715 ProSitePatterns ABC transporters family signature. 624 638 IPR017871 GO:0005524|GO:0016887
Pte12g00008 715 SMART AAA_5 198 430 IPR003593 GO:0016887
Pte12g00008 715 SMART AAA_5 530 697 IPR003593 GO:0016887
Pte12g00008 715 Pfam ABC transporter 193 369 IPR003439 GO:0005524
Pte12g00008 715 CDD ABCF_EF-3 174 414 - -
Pte12g00008 715 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 139 714 - -
Pte12g00008 715 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 441 IPR027417 -
Pte12g00008 715 Gene3D - 467 715 IPR027417 -
Pte12g00008 715 Gene3D - 126 450 IPR027417 -
Pte12g00008 715 MobiDBLite consensus disorder prediction 125 144 - -
Pte12g00008 715 Coils Coil 125 153 - -
Pte12g00008 715 CDD ABCF_EF-3 505 697 - -
Pte12g00008 715 ProSitePatterns ABC transporters family signature. 341 355 IPR017871 GO:0005524|GO:0016887
Pte12g00008 715 FunFam ATP-binding cassette sub-family F member 3 467 715 - -
Pte12g00008 715 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 505 714 IPR003439 GO:0005524
Pte12g00008 715 Pfam ABC transporter 522 652 IPR003439 GO:0005524
Pte12g00008 715 FunFam ABC transporter F family member 3 127 450 - -
Pte12g00008 715 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 174 437 IPR003439 GO:0005524
Pte12g00008 715 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 486 705 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00008 Pte-Chr12 189530 195255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00008 467 699 Calmodulin-binding Proteins AT2G36910 26.592 1.97e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00008 K06158 - qsa:O6P43_024074 1229.54