Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01710 ATGGCAAAACAGAAGATTAAAATTGCTTACATCAACAATGATTGTGCAAGAAGAGCAACATATAGGAAAAGGAAGAAGGGGTTGCTGAAGAAGTTGAGTGAACTAAGCACGTTATGTGGTATCATGTCTTGTGCCATAATTTGTTGTCCCTTCGAATCGAAACCTGTTGTTTGGCCATCTGTTCCTGAAGCCAAAAGCATACTGTCAAAGTTTAAAGGGATGCCTGAAAGTCAGAAGTTGAAGAAGATGTTGGACCAGAAGGACGTACTCAAACAAAGGATTGCTAAAACTAAAGAGCAGATCCGAAAGCAGCGTGAAGAGAATCGTGAGAAAGGATTGAAAACACTCAACTTTGATTGTCGACCGGCCTATAGCATGGAAGAATTAAGTGACAACTCATGA 402 0.403 MAKQKIKIAYINNDCARRATYRKRKKGLLKKLSELSTLCGIMSCAIICCPFESKPVVWPSVPEAKSILSKFKGMPESQKLKKMLDQKDVLKQRIAKTKEQIRKQREENREKGLKTLNFDCRPAYSMEELSDNS* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01710 133 PANTHER MADS BOX PROTEIN 3 106 - -
Pte11g01710 133 Coils Coil 80 114 - -
Pte11g01710 133 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte11g01710 133 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte11g01710 133 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte11g01710 133 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Pte11g01710 133 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Pte11g01710 133 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Pte11g01710 133 FunFam Agamous-like MADS-box protein AGL80 13 98 - -
Pte11g01710 133 Gene3D - 14 116 IPR036879 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01710 1 120 Type I MADS-box Gene Family AT5G48670 50.833 6.31e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pte11g01710 SRF-TF 3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01710 - - ming:122058376 142.51