Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01700 ATGTATCCATCTTCTACGTCTTCGTCCTCCCAAACACCCGTGGGATCAACTGGGTTGACCCGCTATGTTTCAGCACCAGGGTCTCTGCTAACCACGGCGGTCGATGAGGTGGTTGGAGCTGAGCGTGAATTTGCAGCCATTGGATCAAGGTCTATAAGGGGTCAATACTTTACAGGTGATTCATCTTCTATAACCCCAGAGTCAACTTGCGAGGTCAAACCTTCGTACAACAGCAGCAACACACCGTACAGAGGCTTGCAGAGATCGTACAGATTCGATGAAACAAATTTTCGTGATTTTACAAGTGCTAGTCAATTGAAAAACATCGGTGTTGTCAATGGTGTTGGAGAGACATTTTCATCTTCTTCTTCGTCAGCTTTGCTTCGTCAAAGAAGTTCGCCCGCTGGATTCCTTAGCCATCTCAACGTCAATGCGCACAAGAATGGAGCTTCTGATAATGGATTTTCAGTTTCAAGGGTAGCAGGGAGTTACCACAGCTCTCAAGGTGGAGATGATAGTGCGCATAGAGTGTCTAGGTTGAAGTCTCAGTTAAGCTTCAGTGGTCAAGATTCTTCTTCTTCTTCTCAGGCATCCAAGATAAGCAGAAATGTGGATGGCATAACTTCTGACAACAGCCACCTTTCTTATGGCACCACAAGCTGCTTTGCTATGGATGATTGGGATCATTCAAACTCAATTGTGTTCTCTGCCCCTCCCAATAAAAGAGCAAAGAATTATGATGGAGAAATTTTCTTTAGTACTTTAGAATCTCAGTTCAGTCTGCCACAAACATCTCTTGAAATGGAAACTGTGGAGAGGCTGCTTCACATTCCTGAGGATTCAGTTCCATGTAAAATCCGTGCAAAACGTGGCTGCGCTACTCACCCACGCAGCATTGCAGAACGGGAGAGAAGAACTAGAATAAGTGGTAAGCTGAAAAAACTGCAGGATCTTGTTCCTAACATGGACAAGCAAACAAGCTACGCTGACATGCTTGACTTGGCTGTTCAACATATCAAAGGCCTTCAAGGTCAAGTGCAGAAAATGCAGAAGGAAATGGAAAATTGCAAGTGTGGATGA 1080 0.4463 MYPSSTSSSSQTPVGSTGLTRYVSAPGSLLTTAVDEVVGAEREFAAIGSRSIRGQYFTGDSSSITPESTCEVKPSYNSSNTPYRGLQRSYRFDETNFRDFTSASQLKNIGVVNGVGETFSSSSSSALLRQRSSPAGFLSHLNVNAHKNGASDNGFSVSRVAGSYHSSQGGDDSAHRVSRLKSQLSFSGQDSSSSSQASKISRNVDGITSDNSHLSYGTTSCFAMDDWDHSNSIVFSAPPNKRAKNYDGEIFFSTLESQFSLPQTSLEMETVERLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYADMLDLAVQHIKGLQGQVQKMQKEMENCKCG* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01700 359 MobiDBLite consensus disorder prediction 1 21 - -
Pte11g01700 359 Gene3D - 293 358 IPR036638 GO:0046983
Pte11g01700 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 292 342 IPR011598 GO:0046983
Pte11g01700 359 MobiDBLite consensus disorder prediction 161 204 - -
Pte11g01700 359 Coils Coil 332 352 - -
Pte11g01700 359 CDD bHLH_AtbHLH_like 297 350 IPR045239 -
Pte11g01700 359 MobiDBLite consensus disorder prediction 179 204 - -
Pte11g01700 359 FunFam Transcription factor bHLH130 family 293 359 - -
Pte11g01700 359 SMART finulus 298 348 IPR011598 GO:0046983
Pte11g01700 359 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 114 351 - -
Pte11g01700 359 Pfam Helix-loop-helix DNA-binding domain 297 343 IPR011598 GO:0046983
Pte11g01700 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 295 355 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01700 Pte-Chr11 35675083 35678878 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01700 15 359 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 46.301 7.74e-80 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte11g01700 HLH 5.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01700 - - qsa:O6P43_023660 419.083