Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01660 TCACCTCTTCCTGGGGAGACACCATTGGTTTCACCGTTGAGGCCAAGCATTTCTGTCATAGTCGGTGCGCTGGCTTTCATGTTCTCCATAGTATTTCTTCTCCTTCTTTATGCTAAACACTGTAGGCATGGTACCGTTGTCGTCGTCAATGGTTATAGTGGAAATGCAAATGCTCATTATGGTGGAAGAAAGAACTCTGGCATTGACCGGGTTGTGATTGAAACTTTGCCCATTTTCAGATTCGCTTCACTTTCGGGTCAGAAAGACGGGCTTGAATGTGCCGTTTGCCTCACCAGGTTTGAACCAACTGAGGTTCTCAGGTTGCTTCCCAAGTGCAAGCATGCCTTCCATGTCGAATGTGTTGATACTTGGCTTGACGCTCACTCCACTTGTCCTCTTTGCCGTTACCGGGTCGATCCGGAAGACATTCTTCTCGCTGACGACCCGAAGATCCTCTCATTTCCTGCTCCATATGCACCGCCTATTGCAGACCGTGAGATTGGTCCAGAACCTGAGCACCGGAATCGGATTGAACAAAATCCAGAAACCCGCAGGATATCCGGTCGCCACTCATCTGCAGGCGAAAGAGGTGCCGGTGCGGCGTCAACGAAGAGGAAGAGTGAGTCGGTGGCCTTGGGTTGTTTCGACCGGCCCAGAAAAGACGGACTTTTGTTGAACGAGGAGAGGATAGCAGCAGTTTTAGAACCGCGTAGGTTGGAGCACCGGATCCTCGTCTCCCCGAGCGGGTCGCACAAGCAAAGATGGAGCGATGTACAATCCTCAGATCTACTGTATCTACGGTCAGAGATGCTAATCACTGACAGCCGCAGATTGTCGCTGTCATCATCAGTATCAGGATCTAGAGCTGTCTCAGCTCCACGACAGAACACACAGCTGCCATTGCACTCGATAAAAATCGTACAACGTCCT 930 0.5065 SPLPGETPLVSPLRPSISVIVGALAFMFSIVFLLLLYAKHCRHGTVVVVNGYSGNANAHYGGRKNSGIDRVVIETLPIFRFASLSGQKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLADDPKILSFPAPYAPPIADREIGPEPEHRNRIEQNPETRRISGRHSSAGERGAGAASTKRKSESVALGCFDRPRKDGLLLNEERIAAVLEPRRLEHRILVSPSGSHKQRWSDVQSSDLLYLRSEMLITDSRRLSLSSSVSGSRAVSAPRQNTQLPLHSIKIVQRP 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01660 310 MobiDBLite consensus disorder prediction 166 191 - -
Pte11g01660 310 SUPERFAMILY RING/U-box 71 140 - -
Pte11g01660 310 CDD RING-H2_EL5-like 92 135 - -
Pte11g01660 310 MobiDBLite consensus disorder prediction 161 204 - -
Pte11g01660 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 142 IPR013083 -
Pte11g01660 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 7 291 - -
Pte11g01660 310 FunFam RING-H2 finger protein ATL43 68 142 - -
Pte11g01660 310 Pfam Ring finger domain 92 135 IPR001841 -
Pte11g01660 310 SMART ring_2 93 134 IPR001841 -
Pte11g01660 310 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01660 Pte-Chr11 35201580 35202602 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01660 9 299 C3H Transcription Factor Family AT5G05810 49.706 1.16e-80 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01660 K19041 - vvi:100259882 327.405