Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01654 ATGACACCAAGTAACCATCATCATCATTTATCTTCTATTTCTCCAGAGGTTAATAACGTTGACAACTACAATCATGTACGCCTTAGTGCAAACCCTCAGCCCTCCTCTTCATCTTCTTCTTTGTCATATCCTCTTGGCTTCATCCGTGATCAAGATCATGGAGGATTTTCCCATTGGGAACTGAAAAATTATGAAGAACCTCAGAAAAATGTTTCACCCTGTGGATCATGCGATCATGCAATCGAAAACAAAGAGAGAAAGCCTGGCCTCAAATTGACTATCAAGAAGAGAGATTACAAGAAGGAACGCCAAACTGATAATGGCTCGTCCAAGTGGAAGTCCTCAAAGATGGGGATGATGCATACGGATCAAACAGTTGCTGATATACCACAGAGTTCTTTGATGAAACTAGAAGATCAGAAACAACAGTCATCATCTCTAGAAACTGATAACTGCAGCAGTAACAATTTTACAAATAACAGCAACATCACTGTTAGGGTTTGTTCTGATTGCCACACCACTAAGACTCCTCTATGGAGAAGCGGACCAAGAGGTCCTAAGTCACTTTGCAACGCCTGTGGAATTCGACAAAGAAAGGCAAGACGCGCCATGGCTGCAGCTGCAGCATCTGCAAATGGGTCAATTATGGTGACGGAGACATCACGTGTAAAGGGTAAGATGCTGCACAAAGAGAAGAAGTCAAAAACTAGATGTACACCACAGTTCAAGAAAAGGTGCAAACTTGAGACGACTACGCCAACTAATCAAGGCAGAAAGAAGTTTTGCTTTGAAGAATTCATGATGAATTTAAGTAACAACCTGACTTTCCAACAAGTGTTCCCTCAAGACGAGAAGGAAGCAGCGATCCTGCTAATGTCTTTATCCTATGGTCTTGTCCATGGTTGA 906 0.4205 MTPSNHHHHLSSISPEVNNVDNYNHVRLSANPQPSSSSSSLSYPLGFIRDQDHGGFSHWELKNYEEPQKNVSPCGSCDHAIENKERKPGLKLTIKKRDYKKERQTDNGSSKWKSSKMGMMHTDQTVADIPQSSLMKLEDQKQQSSSLETDNCSSNNFTNNSNITVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAASANGSIMVTETSRVKGKMLHKEKKSKTRCTPQFKKRCKLETTTPTNQGRKKFCFEEFMMNLSNNLTFQQVFPQDEKEAAILLMSLSYGLVHG* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01654 301 Pfam GATA zinc finger 168 201 IPR000679 GO:0006355|GO:0043565
Pte11g01654 301 MobiDBLite consensus disorder prediction 99 120 - -
Pte11g01654 301 SMART GATA_3 162 214 IPR000679 GO:0006355|GO:0043565
Pte11g01654 301 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 164 202 - -
Pte11g01654 301 CDD ZnF_GATA 167 195 IPR000679 GO:0006355|GO:0043565
Pte11g01654 301 ProSitePatterns GATA-type zinc finger domain. 168 193 IPR000679 GO:0006355|GO:0043565
Pte11g01654 301 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 5 301 - -
Pte11g01654 301 Gene3D - 164 247 IPR013088 GO:0006355|GO:0008270
Pte11g01654 301 ProSiteProfiles GATA-type zinc finger domain profile. 166 198 IPR000679 GO:0006355|GO:0043565
Pte11g01654 301 FunFam GATA transcription factor 21 162 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01654 Pte-Chr11 35173961 35175259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01654 90 302 C2C2-Gata Transcription Factor Family AT4G26150 37.805 9.62e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte11g01654 GATA 3.2e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01654 - - qsu:112025651 246.899