Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01648 ATGAAAAAGAAGGTGAAGCTTCAGTTCATCGCCGACAATGCAAAAAGGAAAGCATGCTTCCGCAAGCGGAAGAATACTTTTATGAAGGCGGCCAAGGAACTCAGCACCTTGTGTGGAATTGAAGTAGCTGCGATTGTCTATAGTCCCGACAGCAGGGAACCTGATGTCTGGCCTGATGAAGTTGGTGTCCAGAATACCTTGTCCAACTTGATCCGAATGCCTGACCATTGGACGAGCATGACGATATTAACTCAAGAGACATTCCTTCAGGAATGTCTTGATAAAGTGAAACAGAAGCTAGACAACCAGCGGGCCGAAAACCATGAGATGCAGATGACACAGCTCATGTTCCAGTCCATGGCTGGAAGAGAATTGACGGGATTGTCGTTGACTGACCTCAGCAATCTCAACTCTCTGCTGGGCCGTCGTATAGATGAGATTGGTCGCAGGCTTCAAAATCTCGACAGCAAGCAATCTAGTCTGGCACAACCGGACATGGGATCTGCATTAGCCACTGAAGCAGCGACAGCAACTGTTGATGGATCTGTACATGTGGGAAACGACAATGAGATCTCTTACTGGTCCAACAAGTACTTCCCCAATTGA 606 0.4752 MKKKVKLQFIADNAKRKACFRKRKNTFMKAAKELSTLCGIEVAAIVYSPDSREPDVWPDEVGVQNTLSNLIRMPDHWTSMTILTQETFLQECLDKVKQKLDNQRAENHEMQMTQLMFQSMAGRELTGLSLTDLSNLNSLLGRRIDEIGRRLQNLDSKQSSLAQPDMGSALATEAATATVDGSVHVGNDNEISYWSNKYFPN* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01648 201 Coils Coil 93 113 - -
Pte11g01648 201 CDD MADS_SRF_like 1 74 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pte11g01648 201 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Pte11g01648 201 Gene3D - 12 120 IPR036879 GO:0003677|GO:0046983
Pte11g01648 201 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Pte11g01648 201 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Pte11g01648 201 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 51 IPR002100 GO:0003677|GO:0046983
Pte11g01648 201 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Pte11g01648 201 PRINTS MADS domain signature 37 58 IPR002100 GO:0003677|GO:0046983
Pte11g01648 201 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Pte11g01648 201 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01648 Pte-Chr11 35095495 35096100 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01648 2 187 Type I MADS-box Gene Family AT5G48670 34.225 1.99e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pte11g01648 SRF-TF 2.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01648 - - gmx:100813231 142.124