LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte11g01635	ATGAAAGGGGGATTGAAACCTAATTTCAGTCTTAAGCTCAAACTTCCTCAGTCTGATGAAGCCTCTTTTGCCAATTTCCTAACTCAAAGTGGTACCTTTAGGGATGGTGATCTCCTTGTCAATAGAGATGGAGTTCGAATTGTCTCCGAGAACCCAACGGATGCACCACCTCCCATTCAGCCATCAGACAATCAGTTGAGTTTGGCAGATATAGATACCATCAAAGTTGTTGGAAAAGGAAATGGCGGAATTGTGCAATTGGTACAGCACAAATGGACTGGTCAGTTTTTTGCACTGAAGGTAATTCAAATGAATGTTGAAGAGTCTATGCGAAGACAAATTGCTCAAGAGTTGAAAATCAATCAAGCGGCACAATGTCCCTACGTTGTTATTTGTTACCAATCTTTCTATGACAATGGTGCCATTTCAATCATTTTAGAATACATGGATGGGGGATCTCTAGCAGATTTTCTGAAAAGAGTTACAAAAATAACAGAGCCATATCTTGCCAACATCACTAAGCAGGTTCTTGAAGGTTTGTGGTATCTTCATCATGAAAGGCACATTATCCATAGGGACTTGAAACCTTCAAATTTGTTAATTAATCATAGAGGGGAAGTCAAGATTACAGACTTTGGTGTGAGCGCAATAATGGAAAGCACATCTGCTCTGGCAAAAACCTTCGTAGGCACATACAATTATATGTCTCCCGAGAGAATTGATGGGAGCCAGCATGGCTACACCTACAACTATAAAAGTGATATTTGGAGTTTGGGACTAATATTGCTCGAGTGTGCAACTGGACACTTCCCATATATGCCACCAGATCAAAGTCAAGGATGGGAAAATATATTTGAGCTTATTGAAACCATTGTTGAAAAACCGCCTCCTTCTGCACCTTCTGATCAATTCTCTCCAGAATTCTGCTCATTCATTTCTGCATGTTTACAGAAAGACCCGAGAGATAGATTATCAGCTGATGAACTTTTGAGACATCCTTTCATAAGCATGGACAAAGACTTGGATGTTGATCTGTCTTTTTACTTTAGCCACGCAGGAACCCCACTTGCAACTTTGTAG	1080	0.4028	MKGGLKPNFSLKLKLPQSDEASFANFLTQSGTFRDGDLLVNRDGVRIVSENPTDAPPPIQPSDNQLSLADIDTIKVVGKGNGGIVQLVQHKWTGQFFALKVIQMNVEESMRRQIAQELKINQAAQCPYVVICYQSFYDNGAISIILEYMDGGSLADFLKRVTKITEPYLANITKQVLEGLWYLHHERHIIHRDLKPSNLLINHRGEVKITDFGVSAIMESTSALAKTFVGTYNYMSPERIDGSQHGYTYNYKSDIWSLGLILLECATGHFPYMPPDQSQGWENIFELIETIVEKPPPSAPSDQFSPEFCSFISACLQKDPRDRLSADELLRHPFISMDKDLDVDLSFYFSHAGTPLATL*	360

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte11g01635	359	ProSiteProfiles	Protein kinase domain profile.	71	335	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte11g01635	359	Pfam	Protein kinase domain	73	335	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte11g01635	359	Gene3D	Phosphorylase Kinase; domain 1	55	150	-	-
	Pte11g01635	359	SUPERFAMILY	Protein kinase-like (PK-like)	72	337	IPR011009	-
	Pte11g01635	359	ProSitePatterns	Protein kinases ATP-binding region signature.	77	100	IPR017441	GO:0005524
	Pte11g01635	359	PRINTS	Tyrosine kinase catalytic domain signature	146	159	IPR001245	GO:0004672\|GO:0006468
	Pte11g01635	359	PRINTS	Tyrosine kinase catalytic domain signature	183	201	IPR001245	GO:0004672\|GO:0006468
	Pte11g01635	359	PRINTS	Tyrosine kinase catalytic domain signature	253	275	IPR001245	GO:0004672\|GO:0006468
	Pte11g01635	359	Gene3D	Transferase(Phosphotransferase) domain 1	151	353	-	-
	Pte11g01635	359	FunFam	Mitogen-activated protein kinase kinase 6	41	150	-	-
	Pte11g01635	359	CDD	PKc_MAPKK_plant_like	69	335	-	-
	Pte11g01635	359	SMART	serkin_6	71	335	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte11g01635	359	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	189	201	IPR008271	GO:0004672\|GO:0006468
	Pte11g01635	359	FunFam	Mitogen-activated protein kinase kinase 6	152	354	-	-
	Pte11g01635	359	PANTHER	MITOGEN-ACTIVATED KINASE KINASE KINASE	16	339	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte11g01635	Pte-Chr11	34957236	34961034	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte11g01635	28	357	MAP Kinase Kinase Gene Family	AT4G26070	67.868	3.14e-168	471

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Pte11g01635		Pkinase	9.3e-71	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte11g01635	K20603		-	qsa:O6P43_002713	585.104