Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01618 ATGGAAAAGCTGAATTTTGTTAAGAATGGTGTGCTTAGATTACCTCCTGGATTCAGGTTTCATCCAACAGATGAAGAGCTTGTGATTCAGTATTTGAAACGCAAGGTCCTTTCCTGCCCCTTGCCTGCCTCCATCATCCCTGAAGTCGATGTCTGCAAGTCCGATCCTTGGGATTTGCCAGGCGATCTGGAGCAAGAAAGGTACTTCTTCAGCACAAGGGAGGCCAAATATCCCAATGGGAATCGATCCAACAGAGCCACAGGTTCTGGTTACTGGAAGGCAACGGGATTGGACAAGCAAATTGTTACCTCAAAGAGTAACCATGTTGTTGGGATGAAGAAGACTTTGGTTTTCTACCGAGGCAAACCACCCCATGGCTCAAGAACGGATTGGATCATGCACGAATATCGACTCCTCCCCAATGCCTCCCAGGCACAAACGAAGAATGCAATTCAGATGCAGAGCACTCTGGAGCTGCTAAAGAATAATTGGGTACTCTGCCGCATTTTTTTGAAGAAGAGAAACGCTATTTGTAAACAGGAGGATGAGAACATCCCATCGAGTATTTGTGTTCACAAAAGCAGCCAGAAAATCAGGGATTCTGGGCCTGTTTTCTACGATTTCTTGTCAAGAAACAAGACATGTACAGACTTGAACCTTGTCCCTACTTCACCGTCTTCGGGGACAAGTGCAATCACAGAAGCCACTTCCAATGAATCAGATGACCGCGAAGAAGATAGCAGTTGGAATAGCCTTCCTTTATTTCAAAGAAAGTCATAA 780 0.4526 MEKLNFVKNGVLRLPPGFRFHPTDEELVIQYLKRKVLSCPLPASIIPEVDVCKSDPWDLPGDLEQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIVTSKSNHVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLLPNASQAQTKNAIQMQSTLELLKNNWVLCRIFLKKRNAICKQEDENIPSSICVHKSSQKIRDSGPVFYDFLSRNKTCTDLNLVPTSPSSGTSAITEATSNESDDREEDSSWNSLPLFQRKS* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01618 259 MobiDBLite consensus disorder prediction 220 236 - -
Pte11g01618 259 MobiDBLite consensus disorder prediction 220 259 - -
Pte11g01618 259 Pfam No apical meristem (NAM) protein 15 138 IPR003441 GO:0003677|GO:0006355
Pte11g01618 259 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 225 - -
Pte11g01618 259 Gene3D NAC domain 23 177 IPR036093 GO:0003677|GO:0006355
Pte11g01618 259 ProSiteProfiles NAC domain profile. 14 172 IPR003441 GO:0003677|GO:0006355
Pte11g01618 259 SUPERFAMILY NAC domain 10 172 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01618 Pte-Chr11 34829243 34831577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01618 1 252 NAC Transcription Factor Family AT5G13180 59.470 2.06e-101 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte11g01618 NAM 1.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01618 - - tcc:18608896 365.54