Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01596 ATGACCTCATCATTGGACGAGCTTCTTTCTAAGGATGGTTTTAGAGGAAAGGGACTGTTAGCAAGGTCAAGATCTTTCTTTCGTGCAGAAAATGTCTCAAGTAATAAAGTCCAAACAGCTAGAACAAAATCTGATGTTGCTCGACATAGTACAATAGGTGAAACTAGTGCTTTCACTGGGTATAGAAGAGGACAGGATCATCAAGTAAAGACAAAGAAATCAGGTAGTGGATTGAGAAATGAAAATATGGGAAGATTTGCTGTTGTAGAAAAGGAAATGAAAGGTTCGAGTGCTAATCCATCGCAAGATGGGTCAAGGAATGAAGTGGATGAGCATGAACATGTTGTGGTTAAAGATATATACCTGAAGGAAGTGCATAGTTCACAACAAGGGAAGGACAATTATTCTGATGAAGCCAAGGCGGGAAGGGAAACATATAAACATAAATCAGTTAAGAATACAGTGAACGAGAAGCCGATCAACGGAAATGTTCGCATGCGTGCGCATAGTAGTTTCAACTGGAACATATCGAAGATTGTGAAACAAACAGAGATCTCAGATGATAGAGCAAATAGAGGTTCAAGGAGGAGCAAAAGCATGGAAGAAATTGCTGGTGGAAATCATTATCAGGCTGTGCACGAAGTGTCTGAACCACCTCTAGATGAAATTGCAGTCCAAGCTATAGTTTCTATCCTAAATGGATATATAAAACGTTTTCTAAAGGACGAGGACTTCCGGACCACACTGCGAGACAATTGTTTCTCTTCCCTTAACTTTTTTGAGCTACAAGAAGGACAAAGTAACGAGATTAAAGTTATAATGAGTCTTGAGCAAGCAATGGAAACAGTAGAACATGCTGCTGAGGAGGGTGTAAATGGAAAAGATTTAAGAAAATCATCGTTGCAGCTAAGTGTAATTACAGGTCTGAGTTTGAATGATTTGAAGAGCGAGTTTACATGTGGAATTCCTAATTATAAGTTGTCAGCTTGCGCCCATCTTTATCTCAGTGTTGTATATATGATACAAAAGAAAGAAAGGGTGTCAGCGAAGCATCTTTTACAAGTCTTCTGTGACTCACCCTCTCAGGCACGAACATCTTTATTGCCAGAACTATGGGAACGTGTCTTTTCCTCAAATCTAGCACACGTGAAGGCCTGGTACAATCAGGAAGCTGGTTCTCTTCCTGGAACACCAAGCATGGCAAGAAAAAGGAAACTTTTGGCAAAGTTGTATAGTGAAACTCTCGATTCTGGTACCTATCAGTTTGCAGTGTACTACAAGGACTGGATTACCGAAGGAGTAGAAGGCCCATCATTCCCTTGCATTGATGTTCCCACGGGATCAATTGCGGAAGGTCAGCAAGAAGGATTGCCAGGTCATTATTCGGCAACAGCTAGCTCCAACGGTTCATTCTCGCCACAGCCAATGGTCAGCAAAAAACTATATGATGCTGTCTTTAATAGCTCGAGTAAATATGGAATTCGTGACGAGGAGAGGAATTCAGTTACTTGTCAGAGCAGAAGCCCTGACGGCTCTTCTATTGTTAGAAAAGCACTGGTATACGCGTCTAGAACCACTATTTACGGCAACCAAGCTATTGAAGAGTGCATACACAGTTCTGCAATTATTGCATCAAGCCATGCTGATTCAATTCTGCAGGATGCTGAGAAATCAGCAAGCACTGCATGCGAGAAGAGGTTGGATATGTTTTGTGTTTCATATGAAGAGGTTTCCACTGATGAGATTGACGATGACATTGTACAGAAAGAGACTCCCGCAACACTTGTTAATCAATGCGCTCTTCCACAGATAATAGGAAATGAAATGTCTCCCGAGAAGTTTGTAGAATCTGATAAAGAAATGTTAAACACTGAAAAGCATTCTTATCCCATGATCTTGAGTTCTGCTGGAAAGGTCCCAATCTCCTGTTCCTCTTTGCAGCTAAGCCAGCTAAATTCTTCTCTTTCAGAGCTTAATGAACATAATGAGTACATTGATGAAGTACCCTTTTTCTCGAGCATCCCTCAGGATTTCATTTGCCCTCTGACTGGAAAGCTTTTTACTGAACCTGTCACTTTAGAGAATGGTCAAAGCTTTGAGCGAGCTGCCATTATCGCTTGGTTGGAACAAGGAAACATAATCTGTCCTGTAACGGGGAATTTTCTAGAATGTCAGTTAGTTCCATCAGTAAACTTTGTTTTGAAGCATTTGATCGATGATTGGAAGTCAGAACATTTTAAGCATCTTCTCAAAATAGCTTCTCAAATCATGGATTCAGAATTGCAAGGCCAGGAAAAATGGGAAGAAGCAGCTGTTTACAGCTTAGGGTATCTTCTAAGCACTTGTGACAAAGAGGACCAAACAAGATATGTCAAACATTTTATTCTGCAGGGTGGTTTAGAATTCTTGCTAAGAAGGTTTGAATTGGGAACAGCCAAAGAGAAAATTTATGTGGTAATGCTCTTGATGAGTTGTATCGAAGTGGAATCTACGTGCAGATATCAGATAGCACAGAGTATAGATAAGCAATGTATACGTGAGCTTTTGTACAGCAAGCAGCTTAGGTCAAGAGCAACTGCTGTATCTTTACTGATGGAGCTCATATACCTCAAGAGATAG 2619 0.4059 MTSSLDELLSKDGFRGKGLLARSRSFFRAENVSSNKVQTARTKSDVARHSTIGETSAFTGYRRGQDHQVKTKKSGSGLRNENMGRFAVVEKEMKGSSANPSQDGSRNEVDEHEHVVVKDIYLKEVHSSQQGKDNYSDEAKAGRETYKHKSVKNTVNEKPINGNVRMRAHSSFNWNISKIVKQTEISDDRANRGSRRSKSMEEIAGGNHYQAVHEVSEPPLDEIAVQAIVSILNGYIKRFLKDEDFRTTLRDNCFSSLNFFELQEGQSNEIKVIMSLEQAMETVEHAAEEGVNGKDLRKSSLQLSVITGLSLNDLKSEFTCGIPNYKLSACAHLYLSVVYMIQKKERVSAKHLLQVFCDSPSQARTSLLPELWERVFSSNLAHVKAWYNQEAGSLPGTPSMARKRKLLAKLYSETLDSGTYQFAVYYKDWITEGVEGPSFPCIDVPTGSIAEGQQEGLPGHYSATASSNGSFSPQPMVSKKLYDAVFNSSSKYGIRDEERNSVTCQSRSPDGSSIVRKALVYASRTTIYGNQAIEECIHSSAIIASSHADSILQDAEKSASTACEKRLDMFCVSYEEVSTDEIDDDIVQKETPATLVNQCALPQIIGNEMSPEKFVESDKEMLNTEKHSYPMILSSAGKVPISCSSLQLSQLNSSLSELNEHNEYIDEVPFFSSIPQDFICPLTGKLFTEPVTLENGQSFERAAIIAWLEQGNIICPVTGNFLECQLVPSVNFVLKHLIDDWKSEHFKHLLKIASQIMDSELQGQEKWEEAAVYSLGYLLSTCDKEDQTRYVKHFILQGGLEFLLRRFELGTAKEKIYVVMLLMSCIEVESTCRYQIAQSIDKQCIRELLYSKQLRSRATAVSLLMELIYLKR* 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01596 872 CDD RING-Ubox_PUB 675 723 IPR045210 -
Pte11g01596 872 ProSiteProfiles U-box domain profile. 673 748 IPR003613 GO:0004842|GO:0016567
Pte11g01596 872 Pfam U-box domain 674 745 IPR003613 GO:0004842|GO:0016567
Pte11g01596 872 SUPERFAMILY RING/U-box 670 745 - -
Pte11g01596 872 PANTHER OS04G0584500 PROTEIN 1 872 - -
Pte11g01596 872 SMART Ubox_2 677 741 IPR003613 GO:0004842|GO:0016567
Pte11g01596 872 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 657 755 IPR013083 -
Pte11g01596 872 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01596 Pte-Chr11 34564664 34569777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01596 651 867 U-box Gene Family AT1G68940 32.287 3.02e-17 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01596 - - qsu:111987583 661.373