Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01586 ATGGTAAAGAATATCGTTGCTGTTGGTGGAGGCATGTGCAGTAAAGTGGCTGAACCTCGTCATTCATCTAAAACTTATTATGTAGCTTCTTCCAATGATGAAATAAGAAGCTCTCCTAGTGAAAAAGCCGAAAACTGTTCAGGCAGCACGACACATGGATCTCATCCAAATTATGATGTTCGAGACCTTCTTGAATGTCCAGTTTGCATGAATCTAATGTATCCTCCCATTTACCAGTGCCCAAATGGTCACACCCTGTGTTCCAGCTGCAAGGCTAGAGTGCGCAATAGTTGCCCCATGTGCCGGAATGAACTTGGGAATATAAGGTGCTTAGCTCTGGAAAGAGTAGCGGCATCTTTGGAACTTCCTTGTAGGTACCATATTTTTGGTTGTCAATGCATACTCCCCTACTACAGCAGGTTAAGTCATGAGAAAACATGCAAACATGGTTATTATGACTGTCCATACGCTGGAGATGAATGTCCTGTCACGGGTGACTTACCGTATCTTGTAATGCATCTCAAGAATTTTCACAAAGTAGATATGCACAATGGATCCACTTTCAACCACAGATATGTGAAATCCAACCCTGAGGAAATCGAAAACGCTACATGGATGCTAACAGTTTTTAACTGTTTTGACCGACAATTCTGCCTGCACTTTGAAGCTTTCAACATAGGGAATGCACCAGTCTACATTGCCTTTCTTCGTTTCATGGGTGAAGATGAAGAAGCTAAGCAATTCTTGTACAGTCTTGAGGTTGGTGGCAATGGAAGAAAACTTAAATGGCAAGGAATCCCAAGGAGCATCCGTGATAGCCACAGAAAAGTTAGGGACAGTCAAGATGGCCTTATTATTCAGAGAACCTTGGCACTCTATTTTTCTGGGGGTGATGGGACTGAATTGAAATTAAAAGTAGCAGGCCGTATCTGGAAAGTGCAATGA 945 0.4254 MVKNIVAVGGGMCSKVAEPRHSSKTYYVASSNDEIRSSPSEKAENCSGSTTHGSHPNYDVRDLLECPVCMNLMYPPIYQCPNGHTLCSSCKARVRNSCPMCRNELGNIRCLALERVAASLELPCRYHIFGCQCILPYYSRLSHEKTCKHGYYDCPYAGDECPVTGDLPYLVMHLKNFHKVDMHNGSTFNHRYVKSNPEEIENATWMLTVFNCFDRQFCLHFEAFNIGNAPVYIAFLRFMGEDEEAKQFLYSLEVGGNGRKLKWQGIPRSIRDSHRKVRDSQDGLIIQRTLALYFSGGDGTELKLKVAGRIWKVQ* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01586 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 117 IPR013083 -
Pte11g01586 314 CDD RING-HC_SIAHs 64 102 - -
Pte11g01586 314 ProSiteProfiles Zinc finger SIAH-type profile. 119 179 IPR013010 GO:0008270
Pte11g01586 314 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 45 312 - -
Pte11g01586 314 MobiDBLite consensus disorder prediction 30 53 - -
Pte11g01586 314 ProSiteProfiles Zinc finger RING-type profile. 66 102 IPR001841 -
Pte11g01586 314 SUPERFAMILY TRAF domain-like 119 310 - -
Pte11g01586 314 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 174 307 IPR008974 GO:0005515
Pte11g01586 314 Pfam Seven in absentia protein family 108 306 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pte11g01586 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 173 IPR013083 -
Pte11g01586 314 SUPERFAMILY RING/U-box 60 106 - -
Pte11g01586 314 FunFam E3 ubiquitin-protein ligase SINAT5-like 175 307 - -
Pte11g01586 314 FunFam E3 ubiquitin-protein ligase SINAT3 116 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01586 Pte-Chr11 34433347 34436937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01586 6 315 C3H Transcription Factor Family AT2G41980 67.524 1.87e-153 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01586 K04506 - pvy:116127032 485.337