Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01580 ATGGAGGAACAAGTTCCAAAGACCAAGATTGAACGATCAGTGCAGAAGCAACTACCCACTGCAGGTTTTGAAGGAATGGCCATGGGGTCAAAGCTTTTGTCTGATCCAATCATGTTGAGACTTCTTCATTCTCAGACTCAGAGTTTACTTCAAAATCATGGGGGTGTAAAGCCACCATCAGCATCATCTAATAAGCAGTTTGTTTCAGGATTGAATCCTGGTCATCGTTCTTGTGTATCAGCAGGCTCAAACACCAAAGGGTTTATTCCTCTGAATTTTCTGGATTCGTTTCCTGCATTATCTGAAGCAAAATCATCAGAGCTATCTTCTTCACCTTTGTTGTCAACTACTTCTAGATTCCCAAACTTAAGCATGGCTGTGCAGCAACCAAGTATGACCGATTCATCAACCATGGGAATCATCATAGATTCAAATGGACGGAGTGAAAGACATGAAAGAGTGTGCGCTAATGCAGACCCTTTTACTCCTTTGTTTCAATCTGCCGGAAACCAAACTCAACACCATGCAAGTGTTGATTGGCTCAAGATTACTCCCTCTAAATCTCTTACTAGTGACTATTGGTTGAGCACTACAAAGACACAGCCAATGAAATACACTGGAAGAAGGTCGCAGAAGACTACTACGGTGTCATCACCAGCAGGTAAGCTTTTCAGAGGAGTTAGACAAAGACATTGGGGAAAGTGGGTTGCAGAGATAAGGTTACCAAGAAATCGGACAAGGGTGTGGTTAGGAACATTTGATACAGCTGAAGAAGCTGCCATTGCATATGACACAGCAGCTTACATGTTAAGAGGAGACTGTGCTCAGTTGAACTTTCCAGATAGGAAGCATCCAATTGAGGCCACTTCTTTATATGGTACCATTGCTGCTCTCCTGCAAGCTAAGTTACAATCAAGTGGACAAAGAAGTTCTTCGCATATCAATTCAAAAATCACCAGCTCACTTCCAGAGAAAGATCACTTGCTTGTCAACGAAGGAATAGAAACTAGTACAGATCAAAATACAGCAATGAAACTATGGCCATTTGATTTGGAGAACAAAGTCGGGCCTGTGATTGAGAGAAAAAGTCAATCAGAGATTTTGGCAGATGGGGATGGCGTTCAGTTGAGTAGAATGCCCTCCTTGGACATGGACATGATTTGGGATGCTATTTTAATCTCTGATTCATGA 1191 0.4215 MEEQVPKTKIERSVQKQLPTAGFEGMAMGSKLLSDPIMLRLLHSQTQSLLQNHGGVKPPSASSNKQFVSGLNPGHRSCVSAGSNTKGFIPLNFLDSFPALSEAKSSELSSSPLLSTTSRFPNLSMAVQQPSMTDSSTMGIIIDSNGRSERHERVCANADPFTPLFQSAGNQTQHHASVDWLKITPSKSLTSDYWLSTTKTQPMKYTGRRSQKTTTVSSPAGKLFRGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEEAAIAYDTAAYMLRGDCAQLNFPDRKHPIEATSLYGTIAALLQAKLQSSGQRSSSHINSKITSSLPEKDHLLVNEGIETSTDQNTAMKLWPFDLENKVGPVIERKSQSEILADGDGVQLSRMPSLDMDMIWDAILISDS* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01580 396 SUPERFAMILY DNA-binding domain 223 281 IPR016177 GO:0003677
Pte11g01580 396 SMART rav1_2 223 286 IPR001471 GO:0003700|GO:0006355
Pte11g01580 396 ProSiteProfiles AP2/ERF domain profile. 223 280 IPR001471 GO:0003700|GO:0006355
Pte11g01580 396 Gene3D AP2/ERF domain 223 281 IPR036955 GO:0003700|GO:0006355
Pte11g01580 396 FunFam Ethylene-responsive transcription factor 2 222 281 - -
Pte11g01580 396 Pfam AP2 domain 224 272 IPR001471 GO:0003700|GO:0006355
Pte11g01580 396 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 75 391 - -
Pte11g01580 396 PRINTS Ethylene responsive element binding protein signature 224 235 IPR001471 GO:0003700|GO:0006355
Pte11g01580 396 PRINTS Ethylene responsive element binding protein signature 246 262 IPR001471 GO:0003700|GO:0006355
Pte11g01580 396 CDD AP2 222 281 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01580 Pte-Chr11 34340742 34341932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01580 1 391 AP2-EREBP Transcription Factor Family AT4G13620 39.454 3.64e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte11g01580 AP2 6.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01580 - - cave:132179625 313.923