Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01579 ATGTCTTCAACTTCCTTCATGAGCAGAACCCCTTTGCCAAAGAAAGAAGGGGCTCCAAGCTATTATCTATATCCAGCTCCAGAGGCAACATATGAGGATATTGTTGCTAATCCCAACCTCTTCATGAGTAGCTTGGAGAAGCTTCACGCATCCATGCGAACCAAGTTCATGATCCCCATTATTGGGGGAAGAGAACTTGACTTGCATAAGCTGTTTGTAGAAGTGACTTCTCGTGGGGGTATTGAGAAGATCATTAGAGAGAGGAAATGGAAAGAAGTAACTGCTGTGTTCAACTTTCCATCAACTGCTACAAATGCTTCTTTTGTGCTGAGGAAATACTATTCTTCACTACTTCACCACTATGAGCAGATATACTATTTCAAAGCGAGGGGATGGGCACCCATGTCTATTGATTCTTCACAAAGTCCATCATCCACACCAATCACTCCCCCTTTGCAGTCACCATCAGGCATAGAGTCAGCTATGCTTCAGCAGTCAAGGGTTAGCACTGCAGACTCACCTGGAGTGATGCCAATATCATCTGCAGGATCTCCAGTCATAGGGGTTATTGATGGGAAGTTTGAAAGTGGATATCTAGTTACTGTCACTATAGGTGCAGAGAAATTGAAAGGTGTACTTTATCAGGCTCCACAAAGCAATGCAGTTCAAGCTCCCCAACTTCATACTTTTGTCTCCAATGTTAATCATGGTTCTGCATCATCTGGGGTACAACGTCGCCGTCGCAGGAAGAAGTCCGAGATTAGGAGGAGGGATCCTTCTCATCCAAAGCCTAACAGAAGTGGTTATAACTTCTTTTTTCAAGAGCAGCATGCCAGACTTAAACCGCTGCACCAAGGGAGAGACAGAGAAATTAGTAGGATGATAGGTGAACTATGGAACAAACTGAACGAATCCGAAAAAGCGGCAAAGCAAGCTGTTAAAGATAAAGAGAGATATAGGGTTGAAATGGAGAATTACCGGGAGAGACTGAAGGATGGTGGTCAAGTCATTCATGATGCAGTGCCACTACAACAGCGCCACCCTGAGCAGGATACTGAAATGATCGATGCACATGCAAAAATTGATGAAACGGAGGGAGATTCTCCTACGACTCCTGAAGACATGGAGAGTAGTTCAGGTGGAAGTGATTCTGAAGAGGATCAAGCTCCTGAAAAGGATGTGGAAATGGATATTTGTCCTTTAGAAGTTGGTGGTCAAACTAGTAACGTAGATGCAGAGAAGTTAGAAAAGGAGGAAGGCCATCATGAGATGTTGAAGAAGGATGAGAATTGTGTTGATGAGAAGGTTGACAAGAATGACGAGACAACCACAACTCCTCTTGCAGTGCTCTAA 1353 0.4398 MSSTSFMSRTPLPKKEGAPSYYLYPAPEATYEDIVANPNLFMSSLEKLHASMRTKFMIPIIGGRELDLHKLFVEVTSRGGIEKIIRERKWKEVTAVFNFPSTATNASFVLRKYYSSLLHHYEQIYYFKARGWAPMSIDSSQSPSSTPITPPLQSPSGIESAMLQQSRVSTADSPGVMPISSAGSPVIGVIDGKFESGYLVTVTIGAEKLKGVLYQAPQSNAVQAPQLHTFVSNVNHGSASSGVQRRRRRKKSEIRRRDPSHPKPNRSGYNFFFQEQHARLKPLHQGRDREISRMIGELWNKLNESEKAAKQAVKDKERYRVEMENYRERLKDGGQVIHDAVPLQQRHPEQDTEMIDAHAKIDETEGDSPTTPEDMESSSGGSDSEEDQAPEKDVEMDICPLEVGGQTSNVDAEKLEKEEGHHEMLKKDENCVDEKVDKNDETTTTPLAVL* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01579 450 Gene3D High mobility group box domain 246 340 IPR036910 -
Pte11g01579 450 Gene3D - 30 137 IPR036431 GO:0003677
Pte11g01579 450 MobiDBLite consensus disorder prediction 138 157 - -
Pte11g01579 450 SMART bright_3 36 127 IPR001606 GO:0003677
Pte11g01579 450 SMART hmgende2 261 328 IPR009071 -
Pte11g01579 450 FunFam High mobility group B protein 15 29 143 - -
Pte11g01579 450 SMART ARID_2 32 122 - -
Pte11g01579 450 SUPERFAMILY ARID-like 34 132 IPR036431 GO:0003677
Pte11g01579 450 MobiDBLite consensus disorder prediction 242 256 - -
Pte11g01579 450 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 9 378 - -
Pte11g01579 450 Pfam HMG (high mobility group) box 262 327 IPR009071 -
Pte11g01579 450 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Pte11g01579 450 MobiDBLite consensus disorder prediction 233 269 - -
Pte11g01579 450 Coils Coil 302 329 - -
Pte11g01579 450 Pfam ARID/BRIGHT DNA binding domain 40 122 IPR001606 GO:0003677
Pte11g01579 450 MobiDBLite consensus disorder prediction 411 441 - -
Pte11g01579 450 MobiDBLite consensus disorder prediction 362 450 - -
Pte11g01579 450 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Pte11g01579 450 SUPERFAMILY HMG-box 250 335 IPR036910 -
Pte11g01579 450 CDD HMG-box_AtHMGB9-like 262 326 - -
Pte11g01579 450 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 262 327 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01579 Pte-Chr11 34336465 34339946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01579 7 361 ARID Transcription Factor Family AT1G04880 59.892 7.94e-131 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pte11g01579 ARID 6.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01579 - - dzi:111288396 511.146