Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01576 ATGGTGGGAGACGACCATTTAGGAAATTTCCTTGGTGGGGTTTTGTCTTTACATACATATATTGATCTACTTGCTTGGCTTGGCTCGGGGTTTCTCTCGATTAAAGTTCACATATATATACAAGTAGCAATGGACAAGGATGATAACTACTCGGTACAAACATTGCTTCCTTTTACTGCTCCTGTGCCTGCTCCAAGTTTTAACGCATCAATAGACTATTCCCTTGATCATCAACAACATCAGCAGTATCATCATAATCATGAACAACAAGAGCAACAGTTTGTTTCGTCGAAGTTTCGAATTGGAGCAGAAACTTTAGGAGATAACAACAATGTTATGGTGGATTACATGCTAAATAACACTCAGCATCATCAGCAACAAGCAGCACAACCATCTTCTGCTTTTTACGGATCGAGTTATTTAGACAAATTTAGCTTTGCAGATGTGATGCAGTTTGCAGATTTCGGACCAAAGCTAGCCTTAAACCAAACCAAGAATTCAGAAGTAGAATCCGGAATCGACCCGGTTTACTTCCTCAAATTTCCAGTGTTGAATGATAATAAGTCTGATCTGAATCATCAGAATTTAATGGCTAATGCAGAAAATGAAGACAAGCTCAAAGGGGTAGGTGTGGATGAGAACTCAAGACAAGCTAGGGAGGAAGACAGAACAGTACTGAGAGATGATGAAGATGTACGTGCTTCTTCGGATACTAATTCAGTTCAGCTGAGGTTTCTTGGTGAAGATCTACAGAAAAACTCTCAACAAGAATCGAAAAACAAGAGGAAAAGACCAAGAACCATCAAGACCATTGAGGAAGTTGAGAGCCAAAGGATGACCCACATTGCAGTTGAAAGAAATCGAAGAAAGCAAATGAATGAACATCTTCGTGTTTTGAGGTCCCTCATGCCTGGCTCTTACGTACAAAGGGGGGACCAAGCTTCGATAATAGGAGGAGCTATAGAGTTTGTGAGGGAATTAGAACAGCTTCTGCAGTGTTTGGAGTCACAGAAAAGGAGAAGAATCTATGGAGAAGGAGCAGCGAGTACAAGACAAGCTGGGGATTCGTCTAGTCTTGTAATACAACAGTCAAACCAGCAGCCACCATTGTTTCCTCCATTGCCTATACCGAATGAGCAAATGAAACTTGCTATGGAGTTTGAGACCGGGCTTCGTGAAGAAACCGCTGAGAAGAAGTCGTGCTTCGCTGATGTTGAAGTGAAGCTATTAGGGTTTGATGCTATGATCAAAATACTTTCAAGGAGAAGGCCTGGACAGCTCATCAAAACCATTGCTGCACTTGAAGACTTGCAACTTAATATCCTTCACACTAACATCACGACAATTGAACAAACGGTTCTTTACTCATTCAATGTCAAAGTAGCAAGTGATTCGTCAAGGTTCACAGCAGAAGACATAGCAAGTTCAGTTCAGCAGATATTCAGTTTTATACATGCAAACAGTGGCATGTGA 1473 0.4114 MVGDDHLGNFLGGVLSLHTYIDLLAWLGSGFLSIKVHIYIQVAMDKDDNYSVQTLLPFTAPVPAPSFNASIDYSLDHQQHQQYHHNHEQQEQQFVSSKFRIGAETLGDNNNVMVDYMLNNTQHHQQQAAQPSSAFYGSSYLDKFSFADVMQFADFGPKLALNQTKNSEVESGIDPVYFLKFPVLNDNKSDLNHQNLMANAENEDKLKGVGVDENSRQAREEDRTVLRDDEDVRASSDTNSVQLRFLGEDLQKNSQQESKNKRKRPRTIKTIEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRIYGEGAASTRQAGDSSSLVIQQSNQQPPLFPPLPIPNEQMKLAMEFETGLREETAEKKSCFADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLNILHTNITTIEQTVLYSFNVKVASDSSRFTAEDIASSVQQIFSFIHANSGM* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01576 490 FunFam Basic helix-loop-helix transcription factor 267 342 - -
Pte11g01576 490 Pfam Helix-loop-helix DNA-binding domain 277 328 IPR011598 GO:0046983
Pte11g01576 490 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 276 342 IPR036638 GO:0046983
Pte11g01576 490 SMART finulus 282 333 IPR011598 GO:0046983
Pte11g01576 490 Gene3D - 251 341 IPR036638 GO:0046983
Pte11g01576 490 PANTHER TRANSCRIPTION FACTOR FAMA 112 481 IPR044283 GO:0003700|GO:0010052
Pte11g01576 490 MobiDBLite consensus disorder prediction 345 364 - -
Pte11g01576 490 MobiDBLite consensus disorder prediction 198 267 - -
Pte11g01576 490 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 276 327 IPR011598 GO:0046983
Pte11g01576 490 CDD bHLH_AtFAMA_like 279 347 - -
Pte11g01576 490 MobiDBLite consensus disorder prediction 350 364 - -
Pte11g01576 490 MobiDBLite consensus disorder prediction 205 235 - -
Pte11g01576 490 MobiDBLite consensus disorder prediction 236 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01576 Pte-Chr11 34297381 34300040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01576 108 491 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 63.409 6.26e-146 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte11g01576 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01576 K26213 - qsu:112039857 520.005