Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01572 ATGGCTCAGAGTAACTGGGAGGCTGACAAGATGCTTGATGTTTACATCTACGATTATTTGGTGAAGAAGAAACTGCATAATACTGCAAAGTCGTTTATGACTGAAGGGAAAGTAGCTCCTGATCCCGTAGCAATTGATGCTCCTGGGGGTTTCCTATTTGAATGGTGGTCTGTTTTCTGGGACATTTTTATTGCAAGGACAAATGAGAAACATTCAGAGGCTGCTGCAGCATATCTTGAGGCTCAACAAATTAAAGTAAAGGAGCAACAACAGCTTCAAATGCAGCAGATGCAATTATTGCGTCAAGCGCAGATGCAGCGAAGAGATCCTAATCATCCTCCACTTGGTCCTATAAATCCAATTAATACTGAAGGAATGCTTGGACAACCTACTGCTACTGCCTTGGCGGCTAAAATGTATGAGGATCGGATGAAGCAGTCCAATTCAATGGACACAGACACATCGCAGCCTCTTCTGGATGCAAGAATGGCTCTTCTTAAGTCAACAGCAAATCATCCTGGTCAGATGGTGCAAGGAAATACTGGCAGTGTTACCGCTGCATTACAGCAAATCCAGGCCAGGACTCAACAGACAGCTGACATCAAAAGTGATGTTAACATGAACAGTTTGCAGAGATCCCTACCCATGGATCCAAGTTCAATTTATGGCCAGGGAGGCATTCAACCAAAACCTGGACTAGGAAATGCTGGATTGAGCCCAGGAGTTGGTGGGCTTACATTGAAAGGATGGCCTCTTACTGGTAGTATAGACCCCAGATCAGGTCTAGGTGCTCAAGTTCAGAAGCCTCTCCTGCAAGGTACTAATCAGTTTCAGCTTTTGCCCCAGCAGCAGCAGCAACAGCTCTTAGCACAGGTGCAAGCACAGGCAAACCTTGGCAGTTCACCAATGTATGGAGATATGGATCTTCAAAGATTTAGGGGACTAGGTAGGGGTGCTTTGAATTCAAAAGACAGCCAGCCTATGGCAAATGATGGATCTATTGGTTCTCCTATGCAATCAACTTCTTCTAAGATTAACATGCCACAAATCCAGCAGTCATCCTCTCAGCAACAGCAGCAACAACACGATCCTTTGCATCAGCAGCAACTACAACAGAATAGCAGAAAAAGAAAAGGGCCTTCCTCCTCAGGACCTGCAAATAGCACAGGAACTGCAAATACAATTGGCCCATCACCTAACTCTCAGCCATCAACCCCATCTACTCATACACCTGCAGATGGAATCAACATGGCTGGCAACGTGCAGAATGTTCCGGGTGTCTCAAAAGGCTTGATGATGTATGGTGCTGAGGGAGCTGGAGGTCTTGCATCATCCACAAACCAGCTGTTGCAGGACGACATTGAGCATTATGGAGATGTTGGTTCCTTAGATGATAATGTAGAATCTTTTCTCGCACAAGATGACGGAGATGGACGGGATTTGTTTGGCACATTGAAACGAAACACTTCTGAGCATGCTGCTGACACTTCAAAGACTTTTAGCTTCAGCGAAGTTGGTTCTATACGTAAAAGTAACAACAAGGTTGTCTGCTGCCATTTCTCCTCTGATGGGAAGTTGTTGGCTAGTGCTGGGCATGATAAGAAGGTTGTGATATGGAACACGGAGACGCTGCAAACTGAGAGCACCCCAGAAGAACACACACATATAATTACTGATGTTCGCTTCAGACCAAATTCTACTCAGCTGGCAACATCTTCATTCGATACAACAGTTCGCCTTTGGGATGCTTCAGATCCAAACTTTAGCTTACATGCATATACTGGTCATACCTCCAATGTGATGTCCCTTGATTTCCACCCCAAGAAAAATGACATATTCTGCTCTTGTGATGCTAACAATGAGATTCGCTTCTGGAACATCAATCAGTCATCCTCCACCCGTGTTTCCAAGGGAGGTTCCACACAGGTCAGATTTCAACCAAGGACAGGACACCTTTTGGCAACAGCAGCTGGAAATGTTGTCTCCCTCTTCGATGTTGAGACCGATAGACTTGTGCATGCTCTTCAGGGTCATCCTACAGAAGTGCACTCAGTCTGTTGGGACACAAATGGGGATTACCTGGCATCTGTTAGTCAAGAATCTGTCAGAGTCTGGTCACTTGCATCTGGGAAATGCATTCATGAGCTCAGCTCAAGTGGAAACATGTTTCATTCGGGTGTTTTCCATCCAAGCTACTCCACCCTATTGGTAATAGGGGGGTACCAGTCATTGGAGCTGTGGAACATGGCTGAGAATAAGTGCATGACAATTCGTGCACATGAGTGTTTGATATCAGCATTGGCACAATCACCTGTGACAGGGATGGTTGCCTCTGCAAGTCATGATAAATCTGTGAAGATCTGGAAGTGA 2370 0.4544 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEAAAAYLEAQQIKVKEQQQLQMQQMQLLRQAQMQRRDPNHPPLGPINPINTEGMLGQPTATALAAKMYEDRMKQSNSMDTDTSQPLLDARMALLKSTANHPGQMVQGNTGSVTAALQQIQARTQQTADIKSDVNMNSLQRSLPMDPSSIYGQGGIQPKPGLGNAGLSPGVGGLTLKGWPLTGSIDPRSGLGAQVQKPLLQGTNQFQLLPQQQQQQLLAQVQAQANLGSSPMYGDMDLQRFRGLGRGALNSKDSQPMANDGSIGSPMQSTSSKINMPQIQQSSSQQQQQQHDPLHQQQLQQNSRKRKGPSSSGPANSTGTANTIGPSPNSQPSTPSTHTPADGINMAGNVQNVPGVSKGLMMYGAEGAGGLASSTNQLLQDDIEHYGDVGSLDDNVESFLAQDDGDGRDLFGTLKRNTSEHAADTSKTFSFSEVGSIRKSNNKVVCCHFSSDGKLLASAGHDKKVVIWNTETLQTESTPEEHTHIITDVRFRPNSTQLATSSFDTTVRLWDASDPNFSLHAYTGHTSNVMSLDFHPKKNDIFCSCDANNEIRFWNINQSSSTRVSKGGSTQVRFQPRTGHLLATAAGNVVSLFDVETDRLVHALQGHPTEVHSVCWDTNGDYLASVSQESVRVWSLASGKCIHELSSSGNMFHSGVFHPSYSTLLVIGGYQSLELWNMAENKCMTIRAHECLISALAQSPVTGMVASASHDKSVKIWK* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01572 789 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 789 IPR044716 GO:0003714
Pte11g01572 789 ProSiteProfiles Trp-Asp (WD) repeats profile. 593 635 IPR001680 GO:0005515
Pte11g01572 789 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 593 628 - -
Pte11g01572 789 ProSiteProfiles Trp-Asp (WD) repeats profile. 550 582 IPR001680 GO:0005515
Pte11g01572 789 ProSiteProfiles Trp-Asp (WD) repeats profile. 508 549 IPR001680 GO:0005515
Pte11g01572 789 Gene3D - 484 638 IPR015943 GO:0005515
Pte11g01572 789 ProSitePatterns Trp-Asp (WD) repeats signature. 527 541 IPR019775 -
Pte11g01572 789 Pfam LisH 10 36 IPR006594 GO:0005515
Pte11g01572 789 SMART Lish 8 40 IPR006594 GO:0005515
Pte11g01572 789 SUPERFAMILY WD40 repeat-like 501 789 IPR036322 GO:0005515
Pte11g01572 789 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 757 789 - -
Pte11g01572 789 Pfam WD domain, G-beta repeat 671 706 IPR001680 GO:0005515
Pte11g01572 789 Pfam WD domain, G-beta repeat 549 582 IPR001680 GO:0005515
Pte11g01572 789 Pfam WD domain, G-beta repeat 755 789 IPR001680 GO:0005515
Pte11g01572 789 Pfam WD domain, G-beta repeat 590 626 IPR001680 GO:0005515
Pte11g01572 789 Pfam WD domain, G-beta repeat 513 540 IPR001680 GO:0005515
Pte11g01572 789 SMART WD40_4 501 540 IPR001680 GO:0005515
Pte11g01572 789 SMART WD40_4 586 626 IPR001680 GO:0005515
Pte11g01572 789 SMART WD40_4 543 582 IPR001680 GO:0005515
Pte11g01572 789 SMART WD40_4 750 789 IPR001680 GO:0005515
Pte11g01572 789 SMART WD40_4 668 706 IPR001680 GO:0005515
Pte11g01572 789 SMART WD40_4 709 748 IPR001680 GO:0005515
Pte11g01572 789 Gene3D - 639 789 IPR015943 GO:0005515
Pte11g01572 789 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 508 543 - -
Pte11g01572 789 CDD WD40 504 789 - -
Pte11g01572 789 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Pte11g01572 789 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 550 582 - -
Pte11g01572 789 MobiDBLite consensus disorder prediction 323 421 - -
Pte11g01572 789 ProSiteProfiles Trp-Asp (WD) repeats profile. 757 789 IPR001680 GO:0005515
Pte11g01572 789 PRINTS G protein beta WD-40 repeat signature 776 789 IPR020472 -
Pte11g01572 789 PRINTS G protein beta WD-40 repeat signature 569 583 IPR020472 -
Pte11g01572 789 PRINTS G protein beta WD-40 repeat signature 527 541 IPR020472 -
Pte11g01572 789 ProSiteProfiles Trp-Asp (WD) repeats profile. 675 715 IPR001680 GO:0005515
Pte11g01572 789 MobiDBLite consensus disorder prediction 317 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01572 Pte-Chr11 34252751 34263669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01572 486 749 U-box Gene Family AT2G33340 26.596 1.89e-15 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pte11g01572 WD40 0.0069 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01572 - - gmx:100797756 1256.89