LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte11g01556	ATGGACATGGAGATTGACATAGAAGAGCTCGAGTTACTCGAATCAACCTCTCATCTCTACGAAGACTCCGTAGACATCGAACCACCAGAACCATACGCAGACGTCGACGACGTAGAACCTCAATCACCGCCAGAACCGCAAACTTACGGTCATAAGCGTTCTCGATCGGAACATTCGGAAGTTTCTAATGTGTCAGAAACCGTAGGGAAGACGGAGGTGAAGCGGATACGGAATGAGGATTGGCTTCGGTACTCTCCTCTGAAGGAAGTCAATCCAATTGCAACAGAGCAAGTGAGGCCTAAGGAAGAGAAGGTTTTATCGAGGTATGCTTCGGAAATTGATGGAGATTGTGTTCCGGTGACGGCACCAGATGGAGAAAGGGTGTATGCAAAGATATGTAGGTTTGAAGGAGAGAAGAAATTGGATGTAAAAAGAAATTGTGTTGGTCTTATTGCAGAACCTATTAACGTGTTACTGCAGAAATTGGAAGAGGAGGCTTTCACTAAGGCTTTGATTTCTTCTGCTGAAGTTGAAAGTGATTTACTCATTCCGAAAACAGATGTTATCCATGAGCAACTTTGGGTGGACAAGTATTCTCCGAAGTCATTTACGGATCTTCTCAGTGATGAACACACAAATCGTGAGGTTCTTGTATGGTTAAAGCAGTGGGATTCTTGTGTATTTGGATCTGAAATCAGAAGTACGTCTGACGAGGTTCTGTCTGCTCTGAAACGCCATTCTTCAATTTCCCAACATAAAAAACCTTGGGATTCTAGTTTCTTGAAGCATAGAGGACCTCGATGGAGTAGTGGAAGATCTACATTTCCTAGTGATATGAATGAAAGTGGGAACTTAATGGCAATTCCTTACATGTTGAATAAGAAGACAAGACTAATGGGTCCACCAGAACAGAAGATCCTTTTACTTTGTGGTCCACCTGGTACTGGAAAAACTACACTTGCACATGTGGCTGCCAAGCATTGTCAATATGACGTTTTAGAGATTAATGCAAGTGACGATCGTTCAACATCTGCAGTTGAAGCCAAGATCCTTGGTGTGCTTGAGCAATCTGCAAAGCCTGGATCAAAGCCCAAGTGTCTGGTGGTTGATGAAATAGATGGAGCTCTTGCTGATGGAAAGGGAGCAGTTGAGGTCATTTTAAAGATGGTTTCATCTGGAAAGAAGTCCGATGTAATGAAAGATACTTTGGCAAGTGAGCAGCAATATGGAAGGAAGACCCCAAAAAATAGGCATAAAAATACATCTCTGTTAAGACCAATCATTTGCATATGTAATGACTTATATGCCCCTGCCTTGAGACAATTGCGTCAGATAGCAAAGGTTCACATGTTTGTTCAACCAACTGTTGGTCGTGTTGTTAGCAGGCTTAGTTATATATGCAATAAGGAAGGAATGAGAACAGATGTCATTGCTCTAACAGCTCTTGCTGAGTATACAGAATGTGACATTCGCTCATGCTTAAATACTCTCCAGTTTCTGAACAAGAAGCAAGAGACCCTTAATGCTTTTGATTTAGGTTCTCAAGTAATTGGTCAGAAAGACGTGTCAAGGAGTCTTATAGATATTTGGAAAGAGATTTTCCAAAGAAAAAAATCTAGGAGGGAAGGAAGATCTCTCAAAGGTCGCAATAGCATGTCAGTTGAGTATGATTATTTGGATTCTCTCATGTCAAGTCGTGGTGACTTTGACTTAATTATGGATGGAATTCATGAAAATGTATTGCAGCTCCATTACCATGATCCAATGATGCAAAAAACTGTGAAGTGCTTTGATTGCCTGGGAGCTTCTGATCTAGTGTACCAATATGTAATGCGGACCCAACAGATGCTCCTCAAGGTTTATATGCCATCCGTAGCAATTAATGTGCACCATTTAGTGGCTCAAGTTCAGAAACCAAGTATCGAGTGGCCAAAGTCTCAGCAAAGATATCGAACAATGCTGAAGGAAAAGGTGGATAGTTTAAAAAATTGGCACTACAAAATCTCACCAAACATATCGAGGCATTTGTCAATGAGTATCTTTGTGGAAGACCTTATTTCCCCAATCTTACATATACTGTCACCACCAAGTCTTAAGCCGGCGGCATTACGATTATTATCAGAAAAAGAGAAGATCGACCTGACTCAATTGGTCAGCACAATGGTTTCATACTCTATATCATACAAGAACACAAAACCAGATTCTCTGTCTTTGAGCACGAAACAGGAAGCTCCTTTGGATGACTCAGCACTATCTTTTGATCCCCCAATCAGTGGTTACATAAGTTTTAAGGATTATAGATCACATCATTATGTACTTTCTTCATCAGTGAAGCAGTGGTTGGTACACGAGATTGAAAAGCAAAAGATTTTGCAATTAAAAGCTGGGAGATCAGAACCTGGTAGTGTTGACTGTAGCAAGGATAGTTTAAGTCTGGAAACGAAGGCCAATGGATATGGGCAATGTCACAAACCTGATCATGCATACGTGGTTTCCAAGAACACAGAAAAGTCGAAGAATTCAATAACATCAAAGCCAGAGATGCCTAACAATTTATCGAACTTGGTGTGTAGTGGAGATGACAAAGGCTCATTGAAATCGATATCCTCAGGAAATATTAAAAAAACAAGTGGCGGTTCCTCAAAATTTTTCGAAAGGTTTAAAAAAGTCAATGTTAATGGTTCTCAAAGCACCGACAAAGACATACCAAAAGAAGCAACGATGGAGAGAGATTTGCGTCCCTTGCTATTTAAGTTTAACGAGGGTTTTACAAATGCAGTAAAAAGGCCAGTTCGTATCCATGAGTTTCTACTCTAA	2817	0.4065	MDMEIDIEELELLESTSHLYEDSVDIEPPEPYADVDDVEPQSPPEPQTYGHKRSRSEHSEVSNVSETVGKTEVKRIRNEDWLRYSPLKEVNPIATEQVRPKEEKVLSRYASEIDGDCVPVTAPDGERVYAKICRFEGEKKLDVKRNCVGLIAEPINVLLQKLEEEAFTKALISSAEVESDLLIPKTDVIHEQLWVDKYSPKSFTDLLSDEHTNREVLVWLKQWDSCVFGSEIRSTSDEVLSALKRHSSISQHKKPWDSSFLKHRGPRWSSGRSTFPSDMNESGNLMAIPYMLNKKTRLMGPPEQKILLLCGPPGTGKTTLAHVAAKHCQYDVLEINASDDRSTSAVEAKILGVLEQSAKPGSKPKCLVVDEIDGALADGKGAVEVILKMVSSGKKSDVMKDTLASEQQYGRKTPKNRHKNTSLLRPIICICNDLYAPALRQLRQIAKVHMFVQPTVGRVVSRLSYICNKEGMRTDVIALTALAEYTECDIRSCLNTLQFLNKKQETLNAFDLGSQVIGQKDVSRSLIDIWKEIFQRKKSRREGRSLKGRNSMSVEYDYLDSLMSSRGDFDLIMDGIHENVLQLHYHDPMMQKTVKCFDCLGASDLVYQYVMRTQQMLLKVYMPSVAINVHHLVAQVQKPSIEWPKSQQRYRTMLKEKVDSLKNWHYKISPNISRHLSMSIFVEDLISPILHILSPPSLKPAALRLLSEKEKIDLTQLVSTMVSYSISYKNTKPDSLSLSTKQEAPLDDSALSFDPPISGYISFKDYRSHHYVLSSSVKQWLVHEIEKQKILQLKAGRSEPGSVDCSKDSLSLETKANGYGQCHKPDHAYVVSKNTEKSKNSITSKPEMPNNLSNLVCSGDDKGSLKSISSGNIKKTSGGSSKFFERFKKVNVNGSQSTDKDIPKEATMERDLRPLLFKFNEGFTNAVKRPVRIHEFLL*	939

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte11g01556	938	SMART	AAA_5	303	457	IPR003593	GO:0016887
	Pte11g01556	938	CDD	HLD_clamp_RFC	454	509	-	-
	Pte11g01556	938	PANTHER	P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN	1	938	-	-
	Pte11g01556	938	Gene3D	-	191	453	IPR027417	-
	Pte11g01556	938	MobiDBLite	consensus disorder prediction	16	68	-	-
	Pte11g01556	938	Pfam	ATPase family associated with various cellular activities (AAA)	307	394	IPR003959	GO:0005524\|GO:0016887
	Pte11g01556	938	FunFam	Chromosome transmission fidelity protein 18	454	521	-	-
	Pte11g01556	938	CDD	AAA	302	396	-	-
	Pte11g01556	938	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	192	523	IPR027417	-
	Pte11g01556	938	Gene3D	-	454	523	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte11g01556	307	498	Core DNA Replication Machinery Family	AT1G21690	29.851	6.10e-12	66.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte11g01556	K11269		-	qsu:112040105	1105.89