Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01549 ATGGATGAAAAAAGTATTACTGATTTGGCATGGAGGAATTTGGCTTTAGCTGAAAATGGCAACAGTGGAAGACCAGTCACTTGTCATAAGATTTGTGACAATGACGTCAAGACTGGCAGCACCCCTGTTGGAGATATCCCATTGAAGAAAGTGTGTGCCCCCAATAATGCTACATTGTTTAGGAGAGCATCAGCCGACAAAAGTTGTGAGAGGAGACACTCTAATGCAGCTGAAAAGATGGGAAAAGGCAAAGTGATTTGCACCAATTCACCTTTGAAAATGTCCGGCACCGGAAAAGATGCTGTATTGGACTTGACAGAAAATAAGGGACAAGCACTGGGAGTGAAGATTCAGGGGTCTGAAAATATTCCTAGTGTTGGAAGTACTAGAAAGACACCAAGCACCCGGAGTAACTCTGCTCTCTGCAACTTCAATTCTTATGCGAGCCCCAGCTGTGATGGAATTGGAATGAAAAAGGCGGTTAAGAATGACTGCAAAGGTCTAAATCCGGCTATAAATCATGCAAAAGTGGTTGACCTTGTCGATGATTCTCCCCTAAAAAATCAATTACAAGATTCTCTGCCTCGCCATCCATTAAATGTTCAAAGGATAACCAGGCAGAAAAGGTTGGTTCGAAATGGATGTATAGCACCCCAAAATGTTACAACTAAAACTAAGGAATTAACCAAGCAAAGTGGTGATAATGCCAGTAGTGGTGAAGTTCTTGGTAGGTGTGCAGTTTCGAGGGACAAACATGTCATAGATATTTGTGATGTAGTTGCAGAAGAGAAAAGTCCTGATAAATTGAAAGGAAAAGGATTACTAATACATCAACCTGTCGCAAATGCGAATGATTCTGGAACTGTTCAACTCAGAAATTCATCTGAATACTTTGGAGAACGAGGTGGATGGAGAACAACTTCTAGACATTTGAATAATACTAGTCAGTCATCTCAACAGGTAATGGGGCTTCCTTCTGGCAGCAAGCAATATGTTGGCTGCTCCACTAGTACGCAGCAAAAGAGCAGAGTGGATGGGAAATTGACTGGGTGCAGACAAAGCAGCAGGGCATTGTGTAATTTTGATGATACTGCAGCACATTCAAGTTCAGGTATTATTTCTGAGACATGTGGGTTAACTGAATCTCATAATGTGAAGAATGTATTAAATAAACGACGAAGGAAAGAGGGAACGACTTCAAAAAATGATGTGGAGTGTTCGTCATCTGCTTCCTGTGACCCTGATATCATATTACTAGATAGTCCCAGCCAGCCATCAAATCCAAGATCATCCAGGATTCCAAAATATTTGGGGAATTTGGATGCTGAAGTTGTTGCACTATCACCTGAAATAAGTGAAGCGATTTCTCTAAGATCAGATGCCATGCATATGGAGGAGTTAGATGCCAGGGCAAGACAGCTAGAGGCTGATGAGAAGTTGGCTCTTGAGCTCCAACAACAGTTTTATCATGAGGAACCGGCTTTTGAAGCTGGAGAGAGATTGTTGCCAAATCGGTCAAATAGACAGTCTCGGGTGCAGATTAATCAAAATCGTTCCAATAGGAGAGGACCCCAGTCTCAGGTTCTTGTTCTTAATAGAACGATGCACTCCAGGAGTCGCAACCAATCTCGTCCGCCAAGGGTTTCAGGCATGAGGAGGAGATTCAGGTTTCCTTTAAATATGGACTTAGACATGCGTCTTGATATATTGGAAGCACTTGAATCTGCAGCAGGGGATCTTGATGATATGGGAATGGCTGATGATATCTTCCAAATTGAGCGTGATTTTAATGAAAATGATTACGAAATGTTGTTGGCCCTTGATGAGAACAATCACCGCCATGCTGGGGCTAGTGCTAATCAAGTCAGCAGTTTGCCACAGTCTCAAGTACAGACTGAGGCAATGGAAGAGTCGTGCGCAATATGTCTTGAAACACCAACTTTTGGAGAAACTATTCGGCATCTTCCTTGTCTACATAAATTCCACAAAGCTTGTATCGATCCATGGCTCCTTAGAAAAACATCGTGCCCTGTTTGTAAGTCATCCATTACATAA 2055 0.4229 MDEKSITDLAWRNLALAENGNSGRPVTCHKICDNDVKTGSTPVGDIPLKKVCAPNNATLFRRASADKSCERRHSNAAEKMGKGKVICTNSPLKMSGTGKDAVLDLTENKGQALGVKIQGSENIPSVGSTRKTPSTRSNSALCNFNSYASPSCDGIGMKKAVKNDCKGLNPAINHAKVVDLVDDSPLKNQLQDSLPRHPLNVQRITRQKRLVRNGCIAPQNVTTKTKELTKQSGDNASSGEVLGRCAVSRDKHVIDICDVVAEEKSPDKLKGKGLLIHQPVANANDSGTVQLRNSSEYFGERGGWRTTSRHLNNTSQSSQQVMGLPSGSKQYVGCSTSTQQKSRVDGKLTGCRQSSRALCNFDDTAAHSSSGIISETCGLTESHNVKNVLNKRRRKEGTTSKNDVECSSSASCDPDIILLDSPSQPSNPRSSRIPKYLGNLDAEVVALSPEISEAISLRSDAMHMEELDARARQLEADEKLALELQQQFYHEEPAFEAGERLLPNRSNRQSRVQINQNRSNRRGPQSQVLVLNRTMHSRSRNQSRPPRVSGMRRRFRFPLNMDLDMRLDILEALESAAGDLDDMGMADDIFQIERDFNENDYEMLLALDENNHRHAGASANQVSSLPQSQVQTEAMEESCAICLETPTFGETIRHLPCLHKFHKACIDPWLLRKTSCPVCKSSIT* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01549 684 Pfam Ring finger domain 638 680 IPR001841 -
Pte11g01549 684 PANTHER SI:CH211-59O9.10 375 684 - -
Pte11g01549 684 MobiDBLite consensus disorder prediction 503 526 - -
Pte11g01549 684 CDD RING-H2_PA-TM-RING 638 680 - -
Pte11g01549 684 SUPERFAMILY RING/U-box 632 683 - -
Pte11g01549 684 MobiDBLite consensus disorder prediction 498 526 - -
Pte11g01549 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 684 IPR013083 -
Pte11g01549 684 FunFam RING/U-box superfamily protein 604 684 - -
Pte11g01549 684 ProSiteProfiles Zinc finger RING-type profile. 639 680 IPR001841 -
Pte11g01549 684 SMART ring_2 639 679 IPR001841 -
Pte11g01549 684 MobiDBLite consensus disorder prediction 306 328 - -
Pte11g01549 684 MobiDBLite consensus disorder prediction 303 328 - -
Pte11g01549 684 Coils Coil 464 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01549 Pte-Chr11 33993137 33998933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01549 407 685 C3H Transcription Factor Family AT1G04790 39.815 7.49e-59 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01549 - - qsa:O6P43_003049 513.072