Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01541 ATGGAATACAAAAAGCAATCTAAAATACTAATCTCTAGCAATGAAGGGGATGATTTTGACAGCACAGATCGTGACATCGTGAAAGATGATTATACTGAAGGTGAAAATAAGATAGTGGCAGTAATTGATTACAGCTCTGAAGTTGAAGGAGCTCTTGAATGGGCACTTGCAAACACAGTGCAGAAGCAGGATACATTAATTCTTGTACAAAGAGCTCTAAAGAAAGAGATCAAAGTCGAAAGTAAGAGCTTGGTTTCTAGTTTTCAGGTGCTAGTGATCTCTTTGCTAAAGAAAGAGATCAAGATCTTGGAGCTTGTGGAAGAGATGGGCAGAAAAGAGGCAACAAACTGGGCTTCTGCCCAGAGAAAGATGGCGTTCTGGAAGAACATGAATGGTATTGAAGCAGTGTCTCTCTGTCTTTCTCTTTACCTTGTACCTCACAAGGCTACAACATCAGCAATCACATTCGCAGTGCGAGAGCAAAACAGAAACACGCTGAGGATAGAGAAAGTTGAGAGTTTGGCAATGGTGGTGTGCTGGAAATGGTTCAGTTTTTGTTTGCTAATGTTTTTTATGTTGTTCGTTGGAGCAATTGCGAGGGTACAGAGAGACCAGATCTCTCAACTCAGCAATGCTGTTGAAGCTGAGCAGAGGCAGAGCTCAAGCAACTCGTCAATGGCGGCCAGGGCCAAGGAGGTTGAGAAATTAAATGAACATGCAGTGCAGGATCCTGAAGAGGTGGTTTCCATGGTTGAAATGAGGATCCAGAATAGCACAGAAAGGAGAAAGTTGGGATTCTTCTCTTGCGGAACTGGGAATCCAATTGATGACTGCTGGCGCTGTGACCCCAACTGGCAACAGAACAGGAAACGCCTTGCAGATTGTGGCATTGGCTTCGGCAGGAATGCCATTGGAGGCCGTGATGGTCGCTTTTATGTTGTCACTGACCCTGGTGATGACGATCCGGTCAATCCCAGGCCTGGTACTCTGCGTCATGCTGTCATTCAGGAAGAACCCCTTTGGATTATTTTCAAGAGAGACATGGTCATACAATTGAAGCAGGAACTTATAATGAACAGTTTCAAGACAATTGATGGTCGCGGTGTCAATGTTCATATTGCCAATGGAGGCTGCGTTACAATCCAATATATTACTAATGTCATCATTCATGGTCTGCACATTCATGACTGCAAACCTACTGGCAATGCTATGGTGAGGAGCTCGCCATCCCACTATGGATGGAGGACTATGGCAGATGGTGATGCCATCTCTATATTTGGAAGCAGCCATATTTGGGTTGATCATAATTCTCTATCCAATTGTGCTGATGGCCTTGTAGATGCTGTCATGGGGTCAACTGCAATTACCATTTCCAACAATCACTTTACTCACCACAATGAGGTGATACTGTTGGGCCACAGTGATTCTTACACAAGAGACAAGATGATGCAAGTAACAATTGCTTACAACCATTTTGGAGAAGGACTTATCCAGAGAATGCCTAGGTGTAGACATGGGTATTTCCATGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCCATTGGTGGAAGTGCTGAACCAACTATCAACAGCCAGGGCAACAGATATGCTGCACCAACGAATCCATTTGCTAAAGAGGTGACAAAGAGAGTGGAAACAGCTGAAACTGAGTGGAAAGGTTGGAACTGGAGATCAGAAGGAGATCTACTGCTCAATGGTGCGTACTTCACTCCATCAGGAGCAGGAGCTTCAGCCAGCTATGCCAGGGCCTCAAGCTTAGGAGCTAAGTCATCTTCCATGGTTGGTGCCATGACTTCTAATGCTGGTGCTCTCGGCTGTCGCAGAGGCCGCCAATGCTAG 1866 0.4512 MEYKKQSKILISSNEGDDFDSTDRDIVKDDYTEGENKIVAVIDYSSEVEGALEWALANTVQKQDTLILVQRALKKEIKVESKSLVSSFQVLVISLLKKEIKILELVEEMGRKEATNWASAQRKMAFWKNMNGIEAVSLCLSLYLVPHKATTSAITFAVREQNRNTLRIEKVESLAMVVCWKWFSFCLLMFFMLFVGAIARVQRDQISQLSNAVEAEQRQSSSNSSMAARAKEVEKLNEHAVQDPEEVVSMVEMRIQNSTERRKLGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQEEPLWIIFKRDMVIQLKQELIMNSFKTIDGRGVNVHIANGGCVTIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKMMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYAAPTNPFAKEVTKRVETAETEWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGAMTSNAGALGCRRGRQC* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01541 621 FunFam Pectate lyase 272 614 - -
Pte11g01541 621 SUPERFAMILY Pectin lyase-like 248 615 IPR011050 -
Pte11g01541 621 PANTHER PECTATE LYASE 18-RELATED 234 619 IPR045032 GO:0030570
Pte11g01541 621 SMART amb_all 347 544 IPR002022 -
Pte11g01541 621 Gene3D - 272 614 IPR012334 -
Pte11g01541 621 PRINTS Pollen allergen Amb family signature 295 312 IPR018082 -
Pte11g01541 621 PRINTS Pollen allergen Amb family signature 355 371 IPR018082 -
Pte11g01541 621 PRINTS Pollen allergen Amb family signature 499 518 IPR018082 -
Pte11g01541 621 PRINTS Pollen allergen Amb family signature 592 615 IPR018082 -
Pte11g01541 621 PRINTS Pollen allergen Amb family signature 419 440 IPR018082 -
Pte11g01541 621 PRINTS Pollen allergen Amb family signature 319 344 IPR018082 -
Pte11g01541 621 PRINTS Pollen allergen Amb family signature 563 587 IPR018082 -
Pte11g01541 621 PRINTS Pollen allergen Amb family signature 521 540 IPR018082 -
Pte11g01541 621 Coils Coil 199 219 - -
Pte11g01541 621 Pfam Pectate lyase 354 536 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01541 Pte-Chr11 33879897 33892872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01541 209 622 Polysaccharide Lyase AT4G13710 81.190 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01541 K01728 - qsa:O6P43_022134 815.068