Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01520 ATGGCTTCCTCATCATCAACTTCACCATGTGCCGCATGCAAGTTTCTGAGGCGCAAGTGTCAACCCGAGTGTGTGTTTGCACCATACTTCCCTCCTGACCAGCCTCAAAAGTTTGCGAACGTTCACAAAGTATTTGGGGCAAGCAATGTAACGAAGCTCCTGAATGAGCTGCATCCTCATCAAAGAGAAGATGCAGTCAATTCTCTAGCCTACGAAGCAGACATGCGCCTTCGTGACCCCGTCTATGGCTGCGTTGGAGTTATCTCTCTCCTTCAACATCAACTTCGGCAACTACAGATGGACCTCACCTGTGCAAAGTCTGAACTCTCACGTTACCACAACATGGGGTTAACTTATAGCCATAACATTGTTGCTGCTGCTGCTGCAACCAGTAATCATCACCATAGCCAGAACTTGGGAATCAATCTAATTGGTGGCCACCGTGACTACCACTATCAGCATCATCGCCACCAATTGCTTTCCAGAAATGGGGATCAACAACAACCTATAATAAGGAACTTGGACGCGGGGAACAGCTATGATGCTAGTCTGTTGGCCATGAACGTGTCTACAGGCATAGGGCAACTAAGTCAGCTTCAGCAACATAGAGCTGCTGGTTCTGACGACCGTCGTGCTTTAGGTCCTTCTTGA 651 0.4823 MASSSSTSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLTCAKSELSRYHNMGLTYSHNIVAAAAATSNHHHSQNLGINLIGGHRDYHYQHHRHQLLSRNGDQQQPIIRNLDAGNSYDASLLAMNVSTGIGQLSQLQQHRAAGSDDRRALGPS* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01520 216 Coils Coil 88 108 - -
Pte11g01520 216 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 147 - -
Pte11g01520 216 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
Pte11g01520 216 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01520 Pte-Chr11 33660896 33661546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01520 1 217 AS2 family AT1G65620 65.929 4.47e-82 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte11g01520 LOB 3.2e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01520 - - jre:109004073 324.709