Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01509 ATGCAGACATTGACAAGCTGCAGAAAGAAAAGACTTCTAGAAAGAGCTGGTAAAGGTTTTAAACCCAAGCATCCCTTCTTCATGGTTCCTATGCAACCATCATTTGTTTCCCGTAAATTTCGACTGCGTATACCATGGAAATCTGCGAAGGGTCATTTTGATGTCCTACAAAATCATCGAAGTCTCATTCTTCAGTCTACTGATGGGAGAAGAAGCTGGCCTGGTAAATGTTATATCTGGAAAACGAGGTGGAAAACAGATCTAAATATAGTATGTAAGGAATTCGCTCTAGACAATCATCTAGAAGTGGGGGACGTCTGCATCTTTGTTCTTGTTGAACGAAGTAAAAGAACATACCAAGTTATCATTAGCCGAGCCCGTCCTGCTGATGGTAACTGCTCCATGTCTCCAGCTTATGGTTGTGAAGTTGAAGCTAATTTAGGGAATCATAAAAGAAGCTTGGACTTTGAGACTGATCAATTTGTTAAAAATTGTTGTCATCACAACCAATTCGCTACTGGAAATGCTTGCAGTCCCTCAGAAAGGACTGAAGTTGAGCCTGATCCTGAGGCAACGGAAGGAGATGAATTAAAATTTGTTACTTCTGAAGGCAGATACCTCACTTATAGTCATTCATCTAAAGCGTTTGTAGCTGCACAGAAGTTCATCACAAAGATAGAAAATCCTTATTTCATGGTCTCTATCCAGTTGACTCATCTAAATAATTCAGTCACTCCGACTGTTCCAAAAGACTTTCTGAAGACATACGGTAAGCAAAATGTGAGACTTCAAGTAGGAAACAAATGGTGGATTCTTAATCTGGTCAATGAAAGAAAATCAGCTTTCAAAATTTCTGGAGGTTGGCCTGCATTTGTTGAAGGGAATAATCTACAAGTTGGTGACATTTGTGTGTTTGTGCTGATGGACAGAGAAGAGAGCACAGTGAAATTGAAAGTCTCCATCTTTAGACGCACTGTCGAATCACTTGCTGCATATGATCATGTTTGA 1008 0.3978 MQTLTSCRKKRLLERAGKGFKPKHPFFMVPMQPSFVSRKFRLRIPWKSAKGHFDVLQNHRSLILQSTDGRRSWPGKCYIWKTRWKTDLNIVCKEFALDNHLEVGDVCIFVLVERSKRTYQVIISRARPADGNCSMSPAYGCEVEANLGNHKRSLDFETDQFVKNCCHHNQFATGNACSPSERTEVEPDPEATEGDELKFVTSEGRYLTYSHSSKAFVAAQKFITKIENPYFMVSIQLTHLNNSVTPTVPKDFLKTYGKQNVRLQVGNKWWILNLVNERKSAFKISGGWPAFVEGNNLQVGDICVFVLMDREESTVKLKVSIFRRTVESLAAYDHV* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01509 335 Gene3D - 4 127 IPR015300 -
Pte11g01509 335 Gene3D - 207 325 IPR015300 -
Pte11g01509 335 Pfam B3 DNA binding domain 27 126 IPR003340 GO:0003677
Pte11g01509 335 Pfam B3 DNA binding domain 247 324 IPR003340 GO:0003677
Pte11g01509 335 CDD B3_DNA 25 125 IPR003340 GO:0003677
Pte11g01509 335 ProSiteProfiles B3 DNA-binding domain profile. 231 325 IPR003340 GO:0003677
Pte11g01509 335 CDD B3_DNA 229 323 IPR003340 GO:0003677
Pte11g01509 335 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 183 324 IPR044837 -
Pte11g01509 335 SMART B3_2 27 127 IPR003340 GO:0003677
Pte11g01509 335 SMART B3_2 231 325 IPR003340 GO:0003677
Pte11g01509 335 SUPERFAMILY DNA-binding pseudobarrel domain 21 125 IPR015300 -
Pte11g01509 335 SUPERFAMILY DNA-binding pseudobarrel domain 225 324 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01509 Pte-Chr11 33554081 33555373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01509 200 323 REM Transcription Factor Family AT1G49480 30.709 2.05e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pte11g01509 B3 1.1e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01509 - - pper:18770078 134.42