Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01508 ATGGCTGGACATATGGTTTGGGGTATAATGGAAGAGGAGGGTTGGAGGAAAGGGCCTTGGACTGCTGAGGAAGACAGACAACTTATTGAGTATGTCAATCTTCATGGTGAAGGTAGATGGAACTCTGTGGCAAGGGTTGCAGGTCTGAGAAGGAATGGAAAGAGCTGCAGATTAAGATGGGTGAATTACTTGAGGCCAGACCTTAAGAGGGGTCAGATAACCCCACAAGAAGAGAACATAATTTTAGAACTGCATGCTAAGTGGGGAAACAGGTGGTCGACAATTGCTAGAAGCTTGCCTGGAAGAACAGACAATGAAATCAAGAATTATTGGAGGACCCATTTCAAAAAAAAGGTCAAGGGTCCAACTGATGTTGTTGAGAAGGCCAAAAATCGCCTTCTTAGGAGGCAACAATTTCTCCTGCAGCAGCAACAGCAGCAGGAACTGCAACAGCATCAGCATCATCAACAGCAGCAGCAGCAGCAGCCACAGCAAATTCAATTTAACCAAATGGATATGAGGGGTATCATCGCCTTGCTTGATGACAACGACCACCAAGCACCTTGTTTTTCCCAACCAAGGCAAGACATGACCACCATGCTCCCTTGCAGTAGTACTTCAACTGAGGAGCAAGGCTACTTCCTGTCCATGCTTAATGGAAGTACATCTATCCCGGAGACCCTGAATCATGACGACATTAATATTTGGGATGGACTTTGGAACTTGGATGATATCCACAGTAGTACTTTCAGTGGCGCATGTGTAACAAGCAGAGCTAGTCCGCGCAATCTACTCGCTCCTTTTTGCTAG 810 0.4605 MAGHMVWGIMEEEGWRKGPWTAEEDRQLIEYVNLHGEGRWNSVARVAGLRRNGKSCRLRWVNYLRPDLKRGQITPQEENIILELHAKWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKVKGPTDVVEKAKNRLLRRQQFLLQQQQQQELQQHQHHQQQQQQQPQQIQFNQMDMRGIIALLDDNDHQAPCFSQPRQDMTTMLPCSSTSTEEQGYFLSMLNGSTSIPETLNHDDINIWDGLWNLDDIHSSTFSGACVTSRASPRNLLAPFC* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01508 269 CDD SANT 74 115 IPR001005 -
Pte11g01508 269 FunFam MYB-related transcription factor 74 118 - -
Pte11g01508 269 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Pte11g01508 269 SMART sant 69 117 IPR001005 -
Pte11g01508 269 SMART sant 16 66 IPR001005 -
Pte11g01508 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 64 IPR017930 -
Pte11g01508 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Pte11g01508 269 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Pte11g01508 269 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Pte11g01508 269 CDD SANT 19 64 IPR001005 -
Pte11g01508 269 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Pte11g01508 269 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 10 186 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pte11g01508 269 FunFam Myb transcription factor 17 69 - -
Pte11g01508 269 Gene3D - 74 119 - -
Pte11g01508 269 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Pte11g01508 269 MobiDBLite consensus disorder prediction 145 165 - -
Pte11g01508 269 Coils Coil 142 162 - -
Pte11g01508 269 Gene3D - 17 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01508 Pte-Chr11 33547347 33548572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01508 12 270 MYB Transcription Factor Family AT3G24310 56.618 1.82e-90 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte11g01508 Myb_DNA-binding 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01508 K09422 - qsu:112032814 346.665