Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01499 ATGGCTGCCACCGCTGCTGCGGCCATAGGCTCGCCATTTTCTTCATCCATTGACACTGTTAAATGTATCCGTTCAAAGAACATAACCCCAGTTTTTTTCCTAAAAGTTTCAACGTCCCGCATGTCACATTTTCTGCCACAGTCACATGCAATCGAAGCAGTTCATTTTGGTCCCATCTCGCACATCAGGAGGTTGCCTAGGATATCTGCTGCTGTTGCACAAGAAGAAGTGGCAGTGACTGATGAGGCTGAAGCTGGTTTAGTAGAAGAGAATGAGCCGGTGGAAGAGGATCGAGATCAACAAGTTTCCTCTGTAAATACAAAGCTTTATTTTGGGAATTTGCCGTATAGTGTTGACAGTGCACAGCTTGCTGGGATCATTCAAGATTATGGAAGTCCAGAACTCATTGAGGTTCTCTACAACAAACAAACAGGAAAAAGCCGTGGTTTTGCATTTGTAACCATGAGTGCTATTGAAGACTGTCATGCAGTTATAGAAAATCTTGATGGGACTGCTTTCATGGGAAGGACACTGAGGGTGAACTTTTCAGACAAGCCTAGACCAAAAGAACCTTTATATCCTGAAACGGAGCATAAACTTTTTGTGGGAAACCTATCATGGACAGTAACTTCTGACATTCTGAAAATTGCTTTCGAAGAATATGGAAATGTAGTTGGAGCTAGAGTTCTATATGATGGGGAGACAGGAAAATCTCGGGGTTATGGTTTCGTGTGTTACGCAACCAGACAAGAAATGGAAGTTGCCATTGAATCTCTCAATGGAATGGAACTAGAAGGTCGGCCTATGCGTGTGACTGTTGCACTTGGGAAATCCTCATAA 840 0.4321 MAATAAAAIGSPFSSSIDTVKCIRSKNITPVFFLKVSTSRMSHFLPQSHAIEAVHFGPISHIRRLPRISAAVAQEEVAVTDEAEAGLVEENEPVEEDRDQQVSSVNTKLYFGNLPYSVDSAQLAGIIQDYGSPELIEVLYNKQTGKSRGFAFVTMSAIEDCHAVIENLDGTAFMGRTLRVNFSDKPRPKEPLYPETEHKLFVGNLSWTVTSDILKIAFEEYGNVVGARVLYDGETGKSRGYGFVCYATRQEMEVAIESLNGMELEGRPMRVTVALGKSS* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01499 279 SUPERFAMILY RNA-binding domain, RBD 95 190 IPR035979 GO:0003676
Pte11g01499 279 PANTHER OS02G0815200 PROTEIN 37 275 - -
Pte11g01499 279 SUPERFAMILY RNA-binding domain, RBD 191 278 IPR035979 GO:0003676
Pte11g01499 279 CDD RRM2_NsCP33_like 199 274 - -
Pte11g01499 279 Gene3D - 189 279 IPR012677 -
Pte11g01499 279 FunFam 28 kDa ribonucleoprotein, chloroplastic 189 279 - -
Pte11g01499 279 Gene3D - 69 188 IPR012677 -
Pte11g01499 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Pte11g01499 279 SMART rrm1_1 199 272 IPR000504 GO:0003723
Pte11g01499 279 SMART rrm1_1 108 181 IPR000504 GO:0003723
Pte11g01499 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 276 IPR000504 GO:0003723
Pte11g01499 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 269 IPR000504 GO:0003723
Pte11g01499 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 179 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01499 Pte-Chr11 33473777 33476107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01499 109 278 Eukaryotic Initiation Factors Gene Family AT4G34110 30.994 1.31e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01499 - - cave:132178760 379.793