Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g01488 ATGGATTCTGATCAAGGAAAACTTTTCATTGGTGGGATTTCATGGGATACCACTGAGGACACACTCAACACCTATTTTGGTGCTTACGGTGATGTTTTGCAGACTGCTGTGATGAGAGACAAGACCACTGGGAAACCTAGAGGTTTCGGTTTCGTGGTTTTTGCAGATCCTTCTGTCATTGATGCTGTTCTTGAAGAGAAACATGTTATTGATGGAAGAACGGTGGATACCAAGAGAGCCTTATCTAGAGAAGAACAACAAAACACAGGCACTGCAAGGAGTGGAAACCCCAATAGGAATGCAGGAAGTGGTGGAAACTTAAGGACCAAAAAGATTTTTGTTGGAGGCCTGCCCCCGACATTGACTGAAGAAAAATTTCGTCTATATTTTGAAGCTTATGGTCATGTTACTGATGTGGTTGTTATGTATGACCAGAATACAGGCAGGCCACGTGGATTTGGATTTATTTCTTTTGACAGTGAAGATGCAGTTGACAGGGTTTTGCATAAGACATTTCATGATCTGAATGGTAAGCCAGTAGAAGTAAAGCGGGCACTTCCTAAAGATGCTAATCCTGGTGCGAGTGGCCGAATGGGTGGTGCTGGAGGCGGTGGCTATCAGGGATACGGGGCTTCTGGTGGGAACTCAAATGCTTATGATGGTCGTTCGGAATCAAATAGATACATGCAGCCTCAAGGAACTGGAGGTGGATTCCCACCTTACGGTTCTGCTAACTACAATACTCCTGGAGATGGATATGGTCCTGCTCATAATGGGATGGGATATGGTGGATATGGAAACTACGGTGGTTCTGGCACTGGGTATGTTGGACCTGCAGGTGCAACCTATGGAAATCCTAATGTACAAAATGCTGGTTATGCCAATCCATCAGGTGCTCCAAGAAGTTCATGGAATGCTCCATCTCCAGCTGGTTATAGTTCTATGGGTTATGGAAATCCTGCTCCATGGGGTGGTCATAGTGGTGGTGCAGCTGGCTCTGGACCTGCAGGTCAATCCCCCAGTGGAGCTGCTGGATATGGAAATCAGAGCTATGGTTATGGAGGGTATGGTGGATATGGTGGTGGTGACAGTAGTTATGGAAATCAAGGTGCATATGGTGCTGTTGGAGGTCGCTCTGGAGGTATTTTGAGTAACAATGCAACTGGTACTGGAGTGAGTGAGTTACAGGGGACTAGTGGTGGCTATATGGGAAGTGGTTATGGTGATTCCAATGGAAATTCAGCATATGGAAGTGCAGGGTGGAGATCTGACCAAGTGCAAGCCTCTGGTTATGGGACTCCTCAGGGAAATGGTTCTCATGGTGCACAAATTAATTATGGCGGTGGTTATGGAGGTTCTCAGGGAGGACAAGCCCAACAACAGTAA 1386 0.4632 MDSDQGKLFIGGISWDTTEDTLNTYFGAYGDVLQTAVMRDKTTGKPRGFGFVVFADPSVIDAVLEEKHVIDGRTVDTKRALSREEQQNTGTARSGNPNRNAGSGGNLRTKKIFVGGLPPTLTEEKFRLYFEAYGHVTDVVVMYDQNTGRPRGFGFISFDSEDAVDRVLHKTFHDLNGKPVEVKRALPKDANPGASGRMGGAGGGGYQGYGASGGNSNAYDGRSESNRYMQPQGTGGGFPPYGSANYNTPGDGYGPAHNGMGYGGYGNYGGSGTGYVGPAGATYGNPNVQNAGYANPSGAPRSSWNAPSPAGYSSMGYGNPAPWGGHSGGAAGSGPAGQSPSGAAGYGNQSYGYGGYGGYGGGDSSYGNQGAYGAVGGRSGGILSNNATGTGVSELQGTSGGYMGSGYGDSNGNSAYGSAGWRSDQVQASGYGTPQGNGSHGAQINYGGGYGGSQGGQAQQQ* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g01488 461 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Pte11g01488 461 SUPERFAMILY RNA-binding domain, RBD 109 216 IPR035979 GO:0003676
Pte11g01488 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 187 IPR000504 GO:0003723
Pte11g01488 461 Gene3D - 4 86 IPR012677 -
Pte11g01488 461 MobiDBLite consensus disorder prediction 215 232 - -
Pte11g01488 461 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Pte11g01488 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 73 IPR000504 GO:0003723
Pte11g01488 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 169 IPR000504 GO:0003723
Pte11g01488 461 Gene3D - 87 206 IPR012677 -
Pte11g01488 461 MobiDBLite consensus disorder prediction 413 442 - -
Pte11g01488 461 MobiDBLite consensus disorder prediction 75 109 - -
Pte11g01488 461 CDD RRM2_Hrp1p 111 188 - -
Pte11g01488 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 88 IPR000504 GO:0003723
Pte11g01488 461 MobiDBLite consensus disorder prediction 413 461 - -
Pte11g01488 461 SUPERFAMILY RNA-binding domain, RBD 3 105 IPR035979 GO:0003676
Pte11g01488 461 MobiDBLite consensus disorder prediction 215 243 - -
Pte11g01488 461 MobiDBLite consensus disorder prediction 84 105 - -
Pte11g01488 461 SMART rrm1_1 111 183 IPR000504 GO:0003723
Pte11g01488 461 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pte11g01488 461 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 461 - -
Pte11g01488 461 FunFam heterogeneous nuclear ribonucleoprotein 1 105 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g01488 Pte-Chr11 33346487 33350130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g01488 2 189 Eukaryotic Initiation Factors Gene Family AT3G16380 29.082 3.13e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g01488 K14411 - qsa:O6P43_021382 530.791